DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Stam and TOM1

DIOPT Version :9

Sequence 1:NP_477448.1 Gene:Stam / 34505 FlyBaseID:FBgn0027363 Length:689 Species:Drosophila melanogaster
Sequence 2:NP_001129204.1 Gene:TOM1 / 10043 HGNCID:11982 Length:493 Species:Homo sapiens


Alignment Length:596 Identity:127/596 - (21%)
Similarity:218/596 - (36%) Gaps:161/596 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SSPFDADVEKATSETNTNDNWSLILDVCDKVTTNPRLAKDCLKAVMRR-MGHTDPHVVMQAITLL 70
            |||....:||||..:..:::|:|.:::||.:.......||.|:||.:| :|:.:.|.||.|:|:|
Human    10 SSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVL 74

  Fly    71 DALSNNCGKPLHLEVASRDF--ETEFRRLLAKAQPK--VSLKMRQVLKNWAENDYKNDRELDLIP 131
            :....|||...|:.|||:||  ....|.:|.|..|.  |..|:..::::||: .:::..:|..:.
Human    75 ETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD-AFRSSPDLTGVV 138

  Fly   132 ALYAKLRQEGYDFKNLG-DKTS------KTVAEKAAALPKDPNVVSSQQEEDDIAKAIELSLKEN 189
            .:|..||::|.:|.... |..|      :||........:|.....|.|:||....|..|     
Human   139 TIYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSETQSGQDSVGTDSSQQEDSGQHAAPL----- 198

  Fly   190 KGSPKTGSVASTGTASAYPSLYPSFAGTGSSAPSAEASSAP-APEPRKVRALYDFEAAEENELTF 253
                                          .||...:...| ||.|.::..|       .:||..
Human   199 ------------------------------PAPPILSGDTPIAPTPEQIGKL-------RSELEM 226

  Fly   254 FAGEIIHVLDDSDPNWWKGYNQRGEGLFPSNFVTADLSVDPERLDINQQHKSAAAAGQRELDSAA 318
            .:|.:            :..::....|.|:....|||.:..|   :|:              :..
Human   227 VSGNV------------RVMSEMLTELVPTQAEPADLELLQE---LNR--------------TCR 262

  Fly   319 ALQQKTEAAAAAAAAQPVEIDESKIDRLLHLLHEANPEDPSQDSDEMLQLEQEVHQMGPLIDAEL 383
            |:||                      |:|.|:.:...|   |.::|:|.:...::.    :....
Human   263 AMQQ----------------------RVLELIPQIANE---QLTEELLIVNDNLNN----VFLRH 298

  Fly   384 ERVDR-KHAQLTQLSSDLVDAINLYHTLMRDDRAAAGHFAAAAGGFMPGLAGFPGAALYGAPGYP 447
            ||.:| :..|.|:..|:...|.:|..  |..|.||.|:.::...|...|    ..:...|.....
Human   299 ERFERFRTGQTTKAPSEAEPAADLID--MGPDPAATGNLSSQLAGMNLG----SSSVRAGLQSLE 357

  Fly   448 AAGGFPPAQNYPGMHSMPYG-PVPNPPTSAPSQAPGAPGGYLG------QPQGQVPLPYQNGHAA 505
            |:|..   ::...|.::..| .:.:.......:||.|..|..|      |..|.:|:.    .|.
Human   358 ASGRL---EDEFDMFALTRGSSLADQRKEVKYEAPQATDGLAGALDARQQSTGAIPVT----QAC 415

  Fly   506 QMNSLPAHLTQPTGTAPMPQPIYTQPTPVTTQQQ------------------QQPLPQHPQQPPQ 552
            .|..:...|:...|...      .:|..||::.:                  ..|..:.|..|| 
Human   416 LMEDIEQWLSTDVGNDA------EEPKGVTSEGKFDKFLEERAKAADRLPNLSSPSAEGPPGPP- 473

  Fly   553 QQGQQPPQHPQ 563
             .|..|.:..|
Human   474 -SGPAPRKKTQ 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StamNP_477448.1 VHS_STAM 10..154 CDD:239625 46/155 (30%)
SH3_STAM 235..288 CDD:212754 6/52 (12%)
GAT 340..412 CDD:281166 15/72 (21%)
TOM1NP_001129204.1 VHS_Tom1 12..152 CDD:239623 44/140 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 171..212 10/75 (13%)
GAT_TOM1 214..308 CDD:260094 25/158 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 307..336 10/30 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165141241
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.