DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Stam and tom1l1

DIOPT Version :10

Sequence 1:NP_477448.1 Gene:Stam / 34505 FlyBaseID:FBgn0027363 Length:689 Species:Drosophila melanogaster
Sequence 2:NP_001192093.1 Gene:tom1l1 / 100170155 XenbaseID:XB-GENE-494135 Length:477 Species:Xenopus tropicalis


Alignment Length:656 Identity:120/656 - (18%)
Similarity:206/656 - (31%) Gaps:245/656 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FGQSS--PFDADV----EKATSETNTNDNWSLILDVCDKVTTNPRLAKDCLKAVMRRM-GHTDPH 61
            ||:||  ||...|    :..|:.|..|::|...:::||.:.|.....||.:||..:|: .:.:..
 Frog     3 FGKSSKDPFSTPVGHLIDIHTASTLQNEDWGQFMNICDVINTTADGPKDAVKAFRKRICRNYNQK 67

  Fly    62 VVMQAITLLDALSNNCGKPLHLEVASRDFETEFRRLLAKAQPKVSL------KMRQVLKNWAEND 120
            .|..::.||:....||....|..|..:||..:.  |:....||.:|      |:..::..|: :|
 Frog    68 EVKFSLLLLEMCMQNCVPTFHSLVLKKDFSKDV--LVKMLNPKYNLPVSLQNKILFLIMTWS-HD 129

  Fly   121 YKNDRELDLIPALYAKLRQEGYDFKNLGDKTSKTVAEKAAALPKDPNVVSSQQEEDDIAKAIELS 185
            .|.......|..:|.:|.:.|..|.:|                         ||..:        
 Frog   130 PKWKINATEIREVYLELIKRGIKFPSL-------------------------QENGE-------- 161

  Fly   186 LKENKGSPKTGSVASTGTASAYPSLYPSFAGTGSSAPSAEASSAPAPE--PRKVRALYDFEAAEE 248
            :.|.:.|||. |:.|                     |.:..|......  |.::..||.      
 Frog   162 MLETQESPKQ-SIQS---------------------PLSHHSKTDLHNLTPEQIGKLYS------ 198

  Fly   249 NELTFFAGEIIHVLDDSDPNWWKGYNQRGEGLFPSNFVTADLSVDPERLDINQQHKSAAAAGQRE 313
                                                      .:|..|:::             :
 Frog   199 ------------------------------------------EMDMVRMNV-------------K 208

  Fly   314 LDSAAALQQKTEAAAAAAAAQPVEIDESKIDRLLHLLHEANPEDPSQDSDEMLQLEQEVHQMGPL 378
            :.|...|:.:      ..|..|.::|      ||..||:|           .|::::.:..:   
 Frog   209 VMSEILLETR------LGAENPEDMD------LLEELHKA-----------CLEMQRRILTL--- 247

  Fly   379 IDAELERVDRKHA--QLTQLSSDLVDAINLYHTLMRDDRAAAGHFAAAAGGFMPGLAGFPGAALY 441
                :|.|..:..  :|.|::.|| :.:.|.|.  |..||.|..                     
 Frog   248 ----VETVQNEDVIIELVQVNDDL-NNVFLRHE--RFSRAKANQ--------------------- 284

  Fly   442 GAPGYPAAGGFPPAQNYPGMHSMPYGPVPNPPTSAPSQAPGAPGGYLGQPQGQVPLPYQNGHAAQ 506
                        .|::......|.:.  .|.||:..|:...     |..|.|.|...:.||....
 Frog   285 ------------SAEHRRQAEIMTFD--DNGPTAPLSELID-----LNVPSGPVHPVHSNGFLLP 330

  Fly   507 MNSLPAHLTQPTGTAPMPQPIYTQPTPVTTQQQQQPLPQHPQQPPQ----------QQGQQPPQH 561
            ..::|.|          |.|.:|...|..:..:.:....:||...|          :.|.|.|:.
 Frog   331 APTMPMH----------PWPTHTPHFPDKSGLENRVPFLYPQMDLQGLREAVDTRFELGVQLPEV 385

  Fly   562 PQNSYHIDPQSQYAQVPPAVTQIQQPQQPP-APHAYMSPQHQQAPPPQGYQPGPNLYGPNGSPAV 625
            |       ||:.|...|...|.:  |..|. :|...:.|.:     |...|...|..|.:.:.::
 Frog   386 P-------PQNIYDNTPAEPTLL--PTVPALSPTVLLIPNN-----PTSKQLAENKSGASENNSL 436

  Fly   626 VNPQSY 631
            : |..|
 Frog   437 L-PNYY 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StamNP_477448.1 VHS_STAM 10..141 CDD:340770 34/141 (24%)
SH3_STAM 235..288 CDD:212754 2/52 (4%)
GAT_STAM 337..413 CDD:410593 15/77 (19%)
PHA03247 <436..526 CDD:223021 15/89 (17%)
tom1l1NP_001192093.1 VHS_ENTH_ANTH 14..150 CDD:470608 33/138 (24%)
GAT_SF 190..281 CDD:470905 26/184 (14%)

Return to query results.
Submit another query.