DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-3 and TPR9

DIOPT Version :10

Sequence 1:NP_609464.1 Gene:SmydA-3 / 34502 FlyBaseID:FBgn0262599 Length:507 Species:Drosophila melanogaster
Sequence 2:NP_001321056.1 Gene:TPR9 / 840233 AraportID:AT1G33400 Length:810 Species:Arabidopsis thaliana


Alignment Length:619 Identity:109/619 - (17%)
Similarity:188/619 - (30%) Gaps:239/619 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 GRYLVAKGAIRGHGLLIEELPFAVGPKCNGPVVCLGCYEP------NPDPEEEL-CSECGWPL-C 77
            ||.:|::..|....::..|.||:|       |:...|.|.      |..|.:.: |..|..|: |
plant   241 GRGMVSECDIEEASVIHVEEPFSV-------VISKSCRETHCHFCLNELPADTVPCPSCSIPVYC 298

  Fly    78 VECAQ---------------------------------QADNAHFRLECSQLKDARARFFR---- 105
            .|..|                                 .||..:|..:..|......|...    
plant   299 SESCQIQSGGMLSTNEMDKHHIFQKLPDDIVEHIKGVTSADIYYFATDLIQEHQHECRGANWPAV 363

  Fly   106 LPSGSRHCPQLDCIMPLRVLL-----AKEANPERWDNEVAPMEH--HKEERQRDADVWHADRVNI 163
            |||        |.::..|:::     .|.|.......|:..:.|  .|...:...::.....|.|
plant   364 LPS--------DAVLAGRIIMKLINQGKAATDLSNLQEILELSHTYSKMNPENKLELHLLSIVLI 420

  Fly   164 AQYLRGPCQLANRFSEELIMQVVGVL---EVNAFEARSPK--GYPLRC----------------- 206
            ....:..|...: ..|..:.|.:.:|   :||:......|  |...:|                 
plant   421 WCLSKSSCPNLS-VCEASVTQTIILLSQIKVNSIAVARMKSSGDSFKCLPSGNISTKEPIQSLEQ 484

  Fly   207 ------LFPYTGILAHNCVPNTSRSIYPSEGYKIRLRAMVDLEEGQPLHHSYTYTLD--GTAQRQ 263
                  |:....:..|:|.||. ...:.|.|..::....|  ..|.||..||...:.  ....|.
plant   485 IRVGQALYKTGSLFNHSCKPNI-HLYFLSRGLIMQTTEFV--PTGCPLELSYGPEVGKWDCKNRI 546

  Fly   264 KHLKQGKFFTCQCERCLD-------------------PTELGTHFSSLKCGQCAEGFQVPR---- 305
            :.|::..||.|:|..|..                   ...|.::.::.:..:....|..||    
plant   547 RFLEEEYFFHCRCRGCAQINISDLVINGYGCVNTNCTGVVLDSNVATCESEKLNHFFTAPRNVDQ 611

  Fly   306 ---------------------QPT-----EPDTSWNCANCGS--DTSNADALAMLQSLQSEVNAV 342
                                 :|:     ||:.   |..|||  |..|:.|         |||  
plant   612 QVQMREKVYADVGEVASSLLSKPSGSLHIEPEI---CLKCGSRCDIENSHA---------EVN-- 662

  Fly   343 QALPMAAKRLEEIERLLRKYKSLLHPLHFIATGLRQLLIEMYGRVQGYEMVQLPDHQLERKAELC 407
                .|...:..:|.|:..                       ||. .|.:  |.|         |
plant   663 ----KAWNHMRRVEELMNS-----------------------GRA-NYSV--LSD---------C 688

  Fly   408 RQVLRVLNTFEPGLSRTRAMNLYELHVPLV--LLAKSGFIAGKLKGGELRARLVDAIDLLKEC-- 468
            .:.:.||.||         :::|...:...  .:|::.::||:|            :|..|.|  
plant   689 SRSIAVLRTF---------LHMYNKDIADAEDKVAQACYLAGEL------------VDARKHCEA 732

  Fly   469 -VEILE--FEDKSSQEGVLCVVAKQALKQLTLSV 499
             ::||:  :||:.      .|:..:.:|..::.:
plant   733 SIKILKRLYEDEH------VVIGNEMVKLASIQL 760

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-3NP_609464.1 SET_SMYD <192..279 CDD:380997 23/113 (20%)
TPR9NP_001321056.1 TPR 78..>182 CDD:440225
TPR repeat 78..103 CDD:276809
TPR repeat 108..147 CDD:276809
zf-MYND 275..>303 CDD:480929 7/27 (26%)
SET 386..562 CDD:394802 33/179 (18%)
TPR_12 705..781 CDD:315987 13/74 (18%)
Blue background indicates that the domain is not in the aligned region.

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