DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SmydA-3 and smyd3

DIOPT Version :9

Sequence 1:NP_001260366.1 Gene:SmydA-3 / 34502 FlyBaseID:FBgn0262599 Length:507 Species:Drosophila melanogaster
Sequence 2:NP_001032477.1 Gene:smyd3 / 569507 ZFINID:ZDB-GENE-051120-138 Length:380 Species:Danio rerio


Alignment Length:449 Identity:99/449 - (22%)
Similarity:160/449 - (35%) Gaps:137/449 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 VAKGAIRGHGL-LIEEL----------PFAVGPKCNG----PVVCLGCYEPNPDPEEEL--CSEC 72
            :::|  :|:|| .:.|:          |||.   |..    ...|..|.:..    |.|  ||:|
Zfish    10 ISEG--KGNGLRALREIKPGEVIYSCEPFAF---CVARDFLKTACQSCLKRG----ESLSRCSQC 65

  Fly    73 GWP-LC-VECAQQADNAHFRLECSQLKDARARFFRLPSGSRHCPQLDCIMPLRVLLAKEANPE-- 133
            ... .| |:|.:||...|.| ||..||..:.   |:|:.|   .:|...:..::|...|::.|  
Zfish    66 KTARYCNVQCQKQAWPDHKR-ECKCLKHLQP---RIPTDS---VRLVARIIFKLLSQSESDQEEL 123

  Fly   134 ----RWDNEVAPMEHHKEERQR----DADVWHA-DRVNIAQYLRG--PCQL-----ANRFS-EEL 181
                ...:.:|.|...|.|..:    ...|:.| :..::::...|  |..|     .|.|| .:.
Zfish   124 YSIAEHQSHLADMSEEKTEGLKHLCTTLQVYLAEENCDLSRLPSGLDPVSLLARVTCNCFSISDG 188

  Fly   182 IMQVVGVLEVNAFEARSPKGYPLRCLFPYTGILAHNCVPNTSRSIYPSEGYKIRLRAMVDLEEGQ 246
            .:|.|||                 .|:|...:|.|:|.||   .|...||.::.|||:..:...:
Zfish   189 ELQDVGV-----------------GLYPSMSLLNHDCQPN---CIMMFEGKRLTLRAVRVIRSAE 233

  Fly   247 PLHHSYTYTLDGTAQRQKHLKQGKFFTCQCERCLDPTELGTHFSSLKCGQCAEGFQVPRQPTEPD 311
            .|..|||..|..:..|:..         ..:..|..::...|..|               ...||
Zfish   234 ELTISYTDILAPSKDRRSQ---------HWDELLKESQALLHRHS---------------DVVPD 274

  Fly   312 TSWNCANCGSDTSNADALAMLQSLQSEVNAVQALPMAAKRLEEIERLLRKYK---SLLHP---LH 370
            .:               :.||:.|...::|..:|......||...|.|..||   |..||   :.
Zfish   275 RN---------------IYMLRLLDLAMDACISLDDYETALEYGNRALGPYKLYFSDPHPSRAVE 324

  Fly   371 FIATGLRQLLIEMYGRV--------QGYEMVQLP-------DHQLERKAELCRQVLRVL 414
            .:..|..|   ...||:        |.|.::.:.       .:|::|:...|:..|..|
Zfish   325 LLRVGKLQ---HFLGRLEEARGSFTQAYSIMSVTHGAAHALTNQVQRRLSECQAELNTL 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-3NP_001260366.1 SET <207..252 CDD:250181 14/44 (32%)
smyd3NP_001032477.1 zf-MYND 49..87 CDD:280009 14/42 (33%)
SET <201..239 CDD:279228 12/40 (30%)
TPR_12 276..351 CDD:290160 20/92 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.