DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-3 and Smyd3

DIOPT Version :9

Sequence 1:NP_001260366.1 Gene:SmydA-3 / 34502 FlyBaseID:FBgn0262599 Length:507 Species:Drosophila melanogaster
Sequence 2:NP_001020933.1 Gene:Smyd3 / 498295 RGDID:1562635 Length:428 Species:Rattus norvegicus


Alignment Length:503 Identity:111/503 - (22%)
Similarity:174/503 - (34%) Gaps:156/503 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 AIRGHGLLI------EELPFAVGP------KCNGPVVCLGCYEPNPDPEEEL--CSECG-WPLC- 77
            |.||:||..      .||.|...|      |.:..|||..|..    .:|:|  ||:|. ...| 
  Rat    12 ADRGNGLRAVAPLRPGELLFRSDPLAYTVSKGSRGVVCDRCLL----GKEKLMRCSQCRIAKYCS 72

  Fly    78 VECAQQADNAHFRLECSQLKDARARFFRLPSGSRHCPQLDCIMPLRVLLAKEANPER------WD 136
            .:|.::|...|.| ||..||..:.|:   |..|   .:|...:.::::..|.:..|:      .:
  Rat    73 AKCQKKAWPDHKR-ECKCLKSCKPRY---PPDS---VRLLGRVVVKLMDGKPSESEKLYSFYDLE 130

  Fly   137 NEVAPMEHHKEE--RQRDADVWHADRVNI--AQYLRGPCQLANRFSEELI---------MQVVGV 188
            :.::.:...|:|  ||......|..|..|  |..|.....|...|::.:.         ||.|||
  Rat   131 SNISKLTEDKKEGLRQLAMTFQHFMREEIQDASQLPPSFDLFEAFAKVICNSFTICNAEMQEVGV 195

  Fly   189 LEVNAFEARSPKGYPLRCLFPYTGILAHNCVPNTSRSIYPSEGYKIRLRAMVDLEEGQPLHHSYT 253
                             .|:|...:|.|:|.||.|   ....|..:.|||:.::|.|:.|...|.
  Rat   196 -----------------GLYPSMSLLNHSCDPNCS---IVFNGPHLLLRAVREIEAGEELTICYL 240

  Fly   254 YTLDGTAQRQKHLKQGKFFTCQCERCLDPTELGTHFSSLKCGQCAEGFQVPRQPTEPDTSWNCAN 318
            ..|..:.:|:|.|:....|.|.|.||                          |..:.|       
  Rat   241 DMLMTSEERRKQLRDQYCFECDCIRC--------------------------QTQDKD------- 272

  Fly   319 CGSDTSNADALAMLQSLQSEVNAVQALPMAAKRLEEIERLLRKYKSLLHPLHFIATGLRQLLIEM 383
                   ||.|...:.:..||..      :.|::||: :...|::.:|        .|.|.:|..
  Rat   273 -------ADMLTGDEQIWKEVQE------SLKKIEEL-KAHWKWEQVL--------ALCQAIINS 315

  Fly   384 YGRVQGYEMVQLPD-------------------HQLERKAELCRQVLRVLNTFEPGLSRTRAMNL 429
            ...       :|||                   ..||.......:.:.....|.||....|.:.:
  Rat   316 NSE-------RLPDINIYQLKVLDCAMDACINLGMLEEALFYAMRTMEPYRIFFPGSHPVRGVQV 373

  Fly   430 -----YELHVPLVLLA----KSGFIAGKLKGGELRARLVDAIDLLKEC 468
                 .:||..:...|    :..|...|:..|...:.:.|.|.||:||
  Rat   374 MKVGKLQLHQGMFPQAMKNLRLAFDIMKVTHGREHSLIEDLILLLEEC 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-3NP_001260366.1 SET <207..252 CDD:250181 15/44 (34%)
Smyd3NP_001020933.1 zf-MYND 49..87 CDD:280009 12/42 (29%)
SET <201..239 CDD:279228 13/40 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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