DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-3 and SmydA-7

DIOPT Version :9

Sequence 1:NP_001260366.1 Gene:SmydA-3 / 34502 FlyBaseID:FBgn0262599 Length:507 Species:Drosophila melanogaster
Sequence 2:NP_001261039.1 Gene:SmydA-7 / 36916 FlyBaseID:FBgn0034182 Length:488 Species:Drosophila melanogaster


Alignment Length:525 Identity:156/525 - (29%)
Similarity:242/525 - (46%) Gaps:97/525 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 GRYLVAKGAIRGHGLLIEELPFAVGP--KCNGPVVCLGCYEPNPDPEEELCSECG-WPLCVECAQ 82
            ||:|||..||.....::||.|..|.|  :|: .:.|..|.:.:    ..:|..|. :|||::|  
  Fly    17 GRHLVASIAIEPGDTILEERPLLVAPHWECH-QLKCAQCLQES----YVICRRCQVFPLCMDC-- 74

  Fly    83 QADNAHFRLECSQLKDARARFFRLPSGSRHCPQLDCIMP-------LRVLLAKEANPERWDNEVA 140
               |.|...||        .||...:|...|.  |.::.       |::||..| ||..      
  Fly    75 ---NQHDEFEC--------EFFTSGAGKALCK--DILVKNFGICGLLKLLLLLE-NPRT------ 119

  Fly   141 PMEHHKEERQRDADVWHADRVNIAQYLRGPCQLANRFSEELIMQVV---GVLEV----------- 191
                 |.:.|...||    .:|::.|..|.......  |||:::.:   |:.:|           
  Fly   120 -----KGDCQMLIDV----PINLSDYRDGEGMWQEH--EELVVRPLMESGLADVLPTQELTSDAL 173

  Fly   192 ---------NAFEARSPKGYPLRCLFPYTGILAHNCVPNTSRSIYPSEGYKIRLRAMVDLEEGQP 247
                     |:||..:..|..|:.:|.:...|.|:|||||..::  .|.:.::|.|.|.|:.|..
  Fly   174 HAHCIRIDSNSFEVTAKDGDTLKGIFVWGATLPHHCVPNTVVAL--DEQFNMKLYAAVPLQPGDI 236

  Fly   248 LHHSYTYTLDGTAQRQKHLKQGKFFTCQCERCLDPTELGTHFSSLKCGQCAEGFQVPRQPTEPDT 312
            :::|||..|.||:|||..|:..:...|.|.|||||||:|||.|||||.:| .||.|    .|.|:
  Fly   237 IYNSYTNPLMGTSQRQHQLRLSRRLECICSRCLDPTEMGTHMSSLKCKEC-PGFSV----CEIDS 296

  Fly   313 S-----WNCANCGSDTSNADALAMLQSLQSEVNAVQALPMAAKRLEEIERLLRKYKSLLHPLHFI 372
            :     |.|.:|.:..:.|:    :..||:.|.:  ||..|...|:..|.||.:|..||||.||:
  Fly   297 NGKLGDWRCPDCRALLTAAE----VHELQAAVGS--ALVDAMGDLQVYEALLTQYGPLLHPNHFM 355

  Fly   373 ATGLRQLLIEMYGRVQGYEMVQLPDHQ-LERKAELCRQVLRVLNTFEPGLSRTRAMNLYELHVPL 436
            ...::|.:..:.........:..|..: |.|:.|||..:|.|.....||:|:..|:.|:|..:.|
  Fly   356 LLDIKQNIASILRAAALMNSMDQPCKKLLARRVELCSDLLPVCRAVVPGISKLYAIGLFEYLLAL 420

  Fly   437 VLLAKSGFIAGKLKGGELRARLVDAIDLLKECVEILEFEDKSSQEGVLCVVAKQALKQLTLSVEG 501
            |.|.:..|....|...|..|.|..|..:..|.:::|.||.::|.||.|.       .::::.:|.
  Fly   421 VELVELQFAESDLSKKEYVAHLRTASLVATEAMDLLRFEPENSAEGYLA-------DRISMELER 478

  Fly   502 LGSEL 506
            :.|:|
  Fly   479 IESDL 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-3NP_001260366.1 SET <207..252 CDD:250181 14/44 (32%)
SmydA-7NP_001261039.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR46455
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2203
54.920

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