DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-3 and SmydA-5

DIOPT Version :9

Sequence 1:NP_001260366.1 Gene:SmydA-3 / 34502 FlyBaseID:FBgn0262599 Length:507 Species:Drosophila melanogaster
Sequence 2:NP_610202.3 Gene:SmydA-5 / 35538 FlyBaseID:FBgn0033061 Length:553 Species:Drosophila melanogaster


Alignment Length:515 Identity:154/515 - (29%)
Similarity:230/515 - (44%) Gaps:100/515 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 GRYL-VAKGAIRGHGLLIEELPFAVGPK----------CNGPVVCLGCYEPNPDPEEELCSECGW 74
            |||| |.:....|..:.||| |..||||          .|.|  |:|||.|....:.: |..|.|
  Fly    55 GRYLKVTQNIAAGQIVFIEE-PLVVGPKWYLSDADKEASNVP--CVGCYTPCRLGKHQ-CRRCRW 115

  Fly    75 PLCVECAQQADNAHFRLECSQLK---------DARA--RFFRLPSGSRHCPQLDCIMPLRVLLAK 128
            |:|     .|...|..:|||.|.         |||:  .:||   |       |.::.|:.||.:
  Fly   116 PVC-----SAGCKHESMECSVLSLGSGSPTRADARSLNDYFR---G-------DALLVLKCLLLQ 165

  Fly   129 EANPERWDNEVAPMEHHKEERQRDADVWHADRVNIAQYL--RGPCQL----ANRFSE---ELIMQ 184
            ..:|.:| :.:..|:.|:||| :..|::......:..||  |..|:|    .|..::   |::.:
  Fly   166 RQSPTKW-SALLEMQSHEEER-KGTDLYEEAEKRVVTYLQKRFLCRLKQTNPNLLTDCGPEMLHR 228

  Fly   185 VVGVLEVNAFEARSPKGYPLRCLFPYTGILAHNCVPNTSRSIYPSEGYKIRLRAMVDLEEGQPLH 249
            :.|::|.|......|.|..|..||....::.|.|.||.... :.::..::.:||..||.:|..|.
  Fly   229 LCGIIETNFMVIELPSGVELSGLFRQACMMEHACQPNCDFQ-FDNKTQQVAVRAGCDLRKGDHLR 292

  Fly   250 HSYTYTLDGTAQRQKHLKQGKFFTCQCERCLDPTELGTHFSSLKC----GQCAEGFQVPRQPTEP 310
            .:||..|.||..||.||:..|.|:|:|.|||||||.||:.|:|.|    .|...|..:|..|.:.
  Fly   293 ITYTNILWGTQLRQHHLRLTKHFSCRCSRCLDPTEYGTYISALTCLGDVNQTCGGTHLPVDPLDE 357

  Fly   311 DTSWNCANCGSDTSNADALAMLQSLQSEVNAVQALPMAAKRLEEIERLLRKYKSLLHPLHFIATG 375
            :|.|.|..|......| .:|.|||..:|  .|:.|........::|.||.:...:|||.||....
  Fly   358 NTQWKCDTCPMIVDGA-YVAELQSHMTE--QVEGLLAGCPSANQVELLLARLTHMLHPNHFHTFN 419

  Fly   376 LRQLLIEMYGRVQGYEMVQLPDHQLERKAELCRQVLRVLNTFEP--------------------- 419
            |:..||::||...|.|:..|.:.|||||..||.::..|....:|                     
  Fly   420 LKHTLIQLYGNEAGLELGVLSNTQLERKLRLCGELYNVCRRLDPYSIKLAIYVTVILIEVAHTLQ 484

  Fly   420 --------------GLSRTRAMNLYELHVPLVLLAKSGFIAGKLKGGELRARLVDAIDLL 465
                          ||:::|   |.|.|  :||..:...:|||....:|:..:.:...|:
  Fly   485 EQARRAPAEGTSLLGLAQSR---LREAH--MVLEKEQESVAGKKLNEKLQMEIFECEKLI 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-3NP_001260366.1 SET <207..252 CDD:250181 12/44 (27%)
SmydA-5NP_610202.3 zf-MYND 7..43 CDD:280009
SET 185..295 CDD:279228 27/111 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 77 1.000 Inparanoid score I1875
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR46455
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2203
65.970

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