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Protein Alignment SmydA-3 and Smyd2

DIOPT Version :9

Sequence 1:	NP_001260366.1	Gene:	SmydA-3 / 34502	FlyBaseID:	FBgn0262599	Length:	507	Species:	Drosophila melanogaster
Sequence 2:	NP_996733.1	Gene:	Smyd2 / 289372	RGDID:	727785	Length:	433	Species:	Rattus norvegicus

Alignment Length:	292	Identity:	70/292 - (23%)
Similarity:	111/292 - (38%)	Gaps:	67/292 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly    26 AKGAI-------RGHGLLIEELPFAVGP---KCNGPVV------------CLGCYEPNPDPEEEL 68
            |:|.:       :|.||.... ||.||.   .|  |..            |..|:     ..:|.
  Rat     5 ARGGLERFCSAGKGRGLRALR-PFHVGDLLFSC--PAYACVLTVGERGHHCECCF-----ARKEG 61

  Fly    69 CSECGWPLC-------VECAQQADNAHFRLECSQLKDARARFFRLPSGSRHCPQLDCIMPLRVLL 126
            .|:||  .|       ||| |:.|....:||||.:         :..|....|.....:..|:|.
  Rat    62 LSKCG--RCKQAFYCDVEC-QKEDWPLHKLECSSM---------VVFGENWNPSETVRLTARILA 114

  Fly   127 AKEANPERWDNE----VAPMEHHKEERQRD-ADVWHADRVNIAQYLRGPCQLANRFSEELIMQVV 186
            .::.:|||..:|    |...|.|.::...: .|:..:|...:.|:.....:..:..|   ::.:.
  Rat   115 KQKMHPERTPSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKHLEFPDHSS---LVVLF 176

  Fly   187 GVLEVNAF----EARSPKGYPLRCLFPYTGILAHNCVPNTSRSIYPSEGYKIRLRAMVDLEEGQP 247
            ..:..|.|    |..|..|   ..:||...::.|:|.||.   |...:|....:||:.::..|..
  Rat   177 AQVNCNGFTIEDEELSHLG---SAIFPDVALMNHSCCPNV---IVTYKGTLAEVRAVQEIHPGDE 235

  Fly   248 LHHSYTYTLDGTAQRQKHLKQGKFFTCQCERC 279
            :..||...|..|..|...|:...||||:|..|
  Rat   236 VFTSYIDLLYPTEDRNDRLRDSYFFTCECREC 267

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.