DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-3 and set6

DIOPT Version :9

Sequence 1:NP_001260366.1 Gene:SmydA-3 / 34502 FlyBaseID:FBgn0262599 Length:507 Species:Drosophila melanogaster
Sequence 2:NP_596514.1 Gene:set6 / 2541370 PomBaseID:SPBP8B7.07c Length:483 Species:Schizosaccharomyces pombe


Alignment Length:405 Identity:92/405 - (22%)
Similarity:154/405 - (38%) Gaps:67/405 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 CLGCYEPNPDPEEELCSECG-WPLCVECAQQADNAHFRLECSQLKDARARFFRLPSGSRHCPQLD 117
            |..|.|..  .:.:.|:.|. ...|.:..|:||....:|||..|:.::.... |||        .
pombe    49 CSTCTEEK--VKTQRCAACKIIHYCSKGCQKADWPFHKLECKALQASKQNGI-LPS--------V 102

  Fly   118 CIMPLRVLLAKEANPERWDNEVAPMEHHKEERQRDADVWHADRVNIAQYLRGPCQLANRFSEELI 182
            |.:.:|:.|..:.||.    .:.|||.|:.|.|..:..| :|...||.......|:   :..||.
pombe   103 CRLLIRLYLLWQKNPA----IIEPMEGHQNEFQAVSSSW-SDAELIASAASHYTQI---YQAELF 159

  Fly   183 MQVVGVLEVNAFEARSPKGYPL-RCLFPYTGILAHNCVPNTSRSIYPSEGYKIRLRAMVDLEEGQ 246
            .::...|.|||....:.....| .||......|.|:|.|| .:.|:  :|..::|.:..|:::.:
pombe   160 QKLFCRLAVNAMNLVTSSFDSLGMCLDTILCRLNHSCDPN-CQIIF--DGAIVQLVSKRDIKKDE 221

  Fly   247 PLHHSYTYTLDGTAQRQKHLKQGKFFTCQCERCLDPTELGTHFSSLKCGQCAEGFQVPRQPTEPD 311
            .|..||.......:.|||.|.:..||:|.|.||.:.........|...|:......:.:......
pombe   222 QLFISYIDIRLPKSIRQKQLLKKYFFSCYCPRCENDHTTKETDGSKWMGRLRNSKSLMKNLAMAR 286

  Fly   312 TSWNCA---------------NCGS-DTSN---ADALAMLQSLQSE-------VNAVQALPMAAK 350
            ..|:|.               ..|. |.||   |.|...|:|...|       |:..|.|.:..:
pombe   287 DLWSCGWKQTAFPWSNLLHHIKLGMLDESNFNGAFAALYLKSSADEFLDALHVVDEYQLLLLGKQ 351

  Fly   351 RLEEIERLL--------RKYKSLLHPLHFIATGLRQLLIE-------MYGRVQGYEMVQLPDH-- 398
            ...|::.|:        .::.|...|...:.|.....|::       ::..:.|...:.|.|.  
pombe   352 VAMEVKHLMFPNDKPLEMEFPSSSQPQQTVPTNNSLFLLKNIPSFGGLHHCILGRYSISLDDFVL 416

  Fly   399 QLERKAELCRQVLRV 413
            .|..:|:..:|.:|:
pombe   417 WLLDRAQRLQQAVRI 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-3NP_001260366.1 SET <207..252 CDD:250181 11/44 (25%)
set6NP_596514.1 SET 5..483 CDD:225491 92/405 (23%)
zf-MYND 49..87 CDD:280009 10/39 (26%)
SET <142..227 CDD:279228 22/90 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 77 1.000 Inparanoid score I1875
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.860

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