DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17134 and Bace1

DIOPT Version :10

Sequence 1:NP_609458.1 Gene:CG17134 / 34494 FlyBaseID:FBgn0032304 Length:391 Species:Drosophila melanogaster
Sequence 2:NP_062077.1 Gene:Bace1 / 29392 RGDID:2191 Length:501 Species:Rattus norvegicus


Alignment Length:361 Identity:104/361 - (28%)
Similarity:167/361 - (46%) Gaps:49/361 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 ENLHNSMNNEYYGVIAIGTPEQRFNILFDTGSANLWVPSASCPASNTACQRHNKYDSSASSTYVA 130
            :||.......||..:.:|:|.|..|||.||||:|..|.:|..|.      .|..|....||||..
  Rat    65 DNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF------LHRYYQRQLSSTYRD 123

  Fly   131 NGEEFAIEYGTGSLSGFLSNDIVTIA-GISIQNQTFGEALSEPGTTFVD-APFAGILGLAFSAIA 193
            ..:...:.|..|...|.|..|:|:|. |.::..:....|::|....|:: :.:.||||||::.||
  Rat   124 LRKSVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIA 188

  Fly   194 --VDGVTPPFDNMISQGLLDEPVISFYL--------KRQGTAVRGGELILGGIDSSLYRGSLTYV 248
              .|.:.|.||:::.|..:.. :.|..|        :.:..|..||.:|:||||.|||.|||.|.
  Rat   189 RPDDSLEPFFDSLVKQTHIPN-IFSLQLCGAGFPLNQTEALASVGGSMIIGGIDHSLYTGSLWYT 252

  Fly   249 PVSVPAYWQFKVNTIKTNGTLLCNGC------QAIADTGTSLIAVPLAAYRKINRQLGATDND-- 305
            |:....|::..:..::.||..|...|      ::|.|:||:.:.:|...:....:.:.|..:.  
  Rat   253 PIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEK 317

  Fly   306 -------GEAFVRCGRVSS-----LPKVNLNIGGTV------FTLAPRDYI--VKVTQNGQTYCM 350
                   ||..| |.:..:     .|.::|.:.|.|      .|:.|:.|:  |:.....|..|.
  Rat   318 FPDGFWLGEQLV-CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCY 381

  Fly   351 SAFTYMEGLSFWILGDVFIGKFYTVFDKGNERIGFA 386
            . |...:..:..::|.|.:..||.|||:..:|||||
  Rat   382 K-FAVSQSSTGTVMGAVIMEGFYVVFDRARKRIGFA 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17134NP_609458.1 pepsin_retropepsin_like 70..386 CDD:472175 100/355 (28%)
Bace1NP_062077.1 beta_secretase_like 72..437 CDD:133140 102/354 (29%)
Interaction with RTN3. /evidence=ECO:0000250 479..501
DXXLL. /evidence=ECO:0000250|UniProtKB:P56817 496..500
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.