DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6508 and Napsa

DIOPT Version :10

Sequence 1:NP_609457.1 Gene:CG6508 / 34493 FlyBaseID:FBgn0032303 Length:423 Species:Drosophila melanogaster
Sequence 2:NP_113858.1 Gene:Napsa / 60575 RGDID:61940 Length:420 Species:Rattus norvegicus


Alignment Length:403 Identity:158/403 - (39%)
Similarity:223/403 - (55%) Gaps:21/403 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 PLFLLLLDHSMGQLRRTPITRQINQNKTHANVKAEKILLA----AKYFLVDRQSSQTTQV-LANG 69
            ||.|||....:|.|.......::...:.|...:....|..    |:.........:|..| |:..
  Rat     5 PLLLLLCLVLLGNLEPAATLIRVPLRRIHPGHRIFSPLYGWEQRAELSRTPTSGGKTAFVPLSKF 69

  Fly    70 FNLEYTIRLCIGTPPQCFNLQFDTGSSDLWVPSVKCSSTNEACQKHNKYNSSASSSHVEDGKGFS 134
            .|.:|...:.:|||||.|.:.||||||:|||||.:|...:.||..|:::|..||||...:|..|:
  Rat    70 MNTQYFGDIGLGTPPQNFTVVFDTGSSNLWVPSTRCHFFSLACWFHHRFNPKASSSFRPNGTKFA 134

  Fly   135 IQYGSGSLSGFLSTDTVDIDGMVIRNQTFAEAIDEPGSAFVNTIFDGIIGMAFASIS-GGVTTPF 198
            ||||:|.|||.||.|.:.|.|:...:.||.||:.||...|....||||:|:.|.::: |||..|.
  Rat   135 IQYGTGRLSGILSRDNLTIGGIHNVSVTFGEALWEPSLVFALARFDGILGLGFPTLAVGGVQPPL 199

  Fly   199 DNIIRQGLVKHPVFSVYLRRDGTSQSGGEVIWGGIDRSIYRGCINYVPVSMPAYWQFTANSVKI- 262
            |.::.|.|::.||||.||.||.....|||::.||.|...|...:.::||::|||||....|||: 
  Rat   200 DALVEQRLLEKPVFSFYLNRDSEGSDGGELVLGGSDPDHYVPPLTFIPVTIPAYWQVHMQSVKVG 264

  Fly   263 EGILLC-NGCQAIADTGTSLIAVPLRAYKAINKVLNATDAGDGEAFVDCSSLCRLPNVNLNIGGT 326
            .|:.|| .||.||.|||||||..|....:|:||.:.......|:..:.||.:..||.|:.::||.
  Rat   265 TGLNLCAQGCGAILDTGTSLITGPSEEIRALNKAVGGFPLLTGQYLIQCSKIPELPTVSFSLGGV 329

  Fly   327 TYTLTPKDYIYKV-QADNNQTLCLSGFTYL-----QGNLLWILGDIFLGKVYTVFDVGKE----R 381
            .:.||.:||:.|: |:|..  |||.||..|     :|. ||||||:|||....|||.|.:    |
  Rat   330 WFNLTGQDYVIKILQSDVG--LCLLGFQALDIPKPEGP-LWILGDVFLGSYVAVFDRGDKNIGPR 391

  Fly   382 IGFAKLKKHSSYR 394
            :|.|:.:..::.|
  Rat   392 VGLARARSRATGR 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6508NP_609457.1 pepsin_retropepsin_like 68..386 CDD:472175 143/330 (43%)
NapsaNP_113858.1 pepsin_retropepsin_like 69..395 CDD:472175 143/328 (44%)

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