DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6508 and CG5860

DIOPT Version :10

Sequence 1:NP_609457.1 Gene:CG6508 / 34493 FlyBaseID:FBgn0032303 Length:423 Species:Drosophila melanogaster
Sequence 2:NP_650622.1 Gene:CG5860 / 42095 FlyBaseID:FBgn0038506 Length:370 Species:Drosophila melanogaster


Alignment Length:396 Identity:146/396 - (36%)
Similarity:211/396 - (53%) Gaps:57/396 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 QLIIIPLFLLLLDHSMGQLRRTPITRQINQNKTHANVKAEKILLAAKYFLVDRQSSQTTQVLANG 69
            :::.:||:               :.|..|:::          :..|:......::.|...:|...
  Fly    20 KILKVPLY---------------VRRSFNESE----------VFLARSATEGGETLQLQLLLQTH 59

  Fly    70 FNLEYTIRLCIGTPPQCFNLQFDTGSSDLWVPSVKCSSTNEACQKHNKYNSSASSSHVEDGKGFS 134
            .|:||...:.:|.|.|.|.:.||||||:.|:|||.|..:|.|||.|.|||||.|||::.||:.|:
  Fly    60 NNMEYYGTIAMGNPRQNFTVIFDTGSSNTWLPSVNCPMSNSACQNHRKYNSSRSSSYIPDGRNFT 124

  Fly   135 IQYGSGSLSGFLSTDTVDIDGMVIRNQTFAEAIDEPGSAFVNTIFDGIIGMAFASISGGVTTPF- 198
            ::||||.:.|:||.||:.|.|..:.:.||.|::.....||.:..|||::|:....:|...|||| 
  Fly   125 LRYGSGMVVGYLSKDTMHIAGAELPHFTFGESLFLQHFAFSSVKFDGLVGLGLGVLSWSNTTPFL 189

  Fly   199 DNIIRQGLVKHPVFSVYLRRDGTSQSGGEVIWGGIDRSIYRGCINYVPVSMPAYW--QFTANSVK 261
            :.:..|.|::..|||||||||..     |:::||.|.|.:.|.::|||||....|  |.:.:|| 
  Fly   190 ELLCAQRLLEKCVFSVYLRRDPR-----EIVFGGFDESKFEGKLHYVPVSQWHTWSLQISKSSV- 248

  Fly   262 IEGILLCNG-CQAIADTGTSLIAVPLRAYKAINKVLNATDA--GDGEAFVDCSSLCRLPNVNLNI 323
              |.....| ..||.||||||:.||.:.|   :.:||...|  .:|...|.|.| ..|||:|:.|
  Fly   249 --GTKQIGGKSNAILDTGTSLVLVPQQTY---HNLLNTLSAKLQNGYFVVACKS-GSLPNINILI 307

  Fly   324 GGTTYTLTPKDYIYKVQADNNQTLCLS------GFTYLQGNLLWILGDIFLGKVYTVFDVGKERI 382
            |...:.||..|||.:|..|......|:      ||        |:||||||.:.|||||..::||
  Fly   308 GDKVFPLTSSDYIMEVLLDRKPACVLAIAPINRGF--------WVLGDIFLRRYYTVFDATEKRI 364

  Fly   383 GFAKLK 388
            |.||.|
  Fly   365 GLAKAK 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6508NP_609457.1 pepsin_retropepsin_like 68..386 CDD:472175 136/329 (41%)
CG5860NP_650622.1 Asp 63..369 CDD:394983 136/325 (42%)

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