DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ubc2 and ube2l3b

DIOPT Version :9

Sequence 1:NP_001260362.1 Gene:Ubc2 / 34487 FlyBaseID:FBgn0015320 Length:232 Species:Drosophila melanogaster
Sequence 2:NP_001076266.1 Gene:ube2l3b / 321943 ZFINID:ZDB-GENE-030131-662 Length:190 Species:Danio rerio


Alignment Length:188 Identity:61/188 - (32%)
Similarity:96/188 - (51%) Gaps:29/188 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 NAGGGDEPRKEAKTTPRISRALGTSA--KRIQ---------KELAEITLDPPPNCSAGPKG---- 112
            :||||...:::.... .|..|.|..|  .|:|         .||.||.       .:|.|.    
Zfish     5 SAGGGRGTQQQVFGV-EIVEADGQIACYSRLQCLNLSLHSLTELEEIR-------KSGMKNFRNI 61

  Fly   113 ----DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 173
                .|:..|...|: |....|:.|.|.::|.|..||||||||:||:|:|||.||:.:|.:||.:
Zfish    62 QVDESNILTWQGLIV-PDNPPYDKGAFRIEIIFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV 125

  Fly   174 LK-DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREEHDRIARLWTKRY 230
            :. :||.||....:|:.|:.:|:.|..|..||...:|.:|.::|::..:.|..:||::
Zfish   126 ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFFKNAEEFTKKH 183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubc2NP_001260362.1 COG5078 86..231 CDD:227410 54/165 (33%)
UQ_con 90..227 CDD:278603 51/154 (33%)
ube2l3bNP_001076266.1 COG5078 44..186 CDD:227410 51/148 (34%)
UBCc 46..185 CDD:214562 51/146 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.