Protein Alignment CG12299 and Clamp

DIOPT Version :10

• Sequence 1: NP_609448.1
• Gene: CG12299 / 34483
• FlyBaseID: FBgn0032295
• Length: 736
• Species: Drosophila melanogaster
• Sequence 2: NP_001014498.1
• Gene: Clamp / 35445
• FlyBaseID: FBgn0032979
• Length: 566
• Species: Drosophila melanogaster
• Alignment Length: 527
• Identity: 138/527 - (26%)
• Similarity: 209/527 - (39%)
• Gaps: 153/527 - (29%)

  Fly    45 DLTFHCMCCAEFFVHPLALYQHMNTLHPHEPGNGQQEQESPGDESEDYSWIFEPVCELAEDG--- 106
            :::|.|..|::.|.|...|..|...   |..|..||:|:.......|      .:..::..|
  Fly   124 NISFKCDVCSDMFPHLALLNAHKRM---HTDGEQQQQQQHNAQAGGD------SIAVVSAQGLVQ 179

  Fly   107 SDSSDGSASSGSDSSSSSDDDD-------DDDDDDSSSSSSSSSNSSSSSSS-------VPTTSN 157
            :.:..|:...|.....|||..:       .....:|.:|...:..||....|       |...|.
  Fly   180 AQNIIGNGQMGQIQIVSSDTLEPVQQSVMQQQQHESKASKCINCGSSMLQQSKRKGPKQVRCESC 244

  Fly   158 SNTQQSQESVQPLHGLVAGPGYNEFQLQMTDPRESTSIFMVQPTVSVTP-----LQQLL------ 211
            ...:|:.:..|.|  .||..|      ||..|        || .:|.||     |||::
  Fly   245 MQAEQTAQQQQQL--FVAQDG------QMAHP--------VQ-IISTTPQAQAQLQQIVAAQTGG 292

  Fly   212 -PPAPTVSPGLGLQSTPIKRRRGRRSNIGAPVMDPALNGNQKCFQCT---------HCEASFPNA 266
             .|....|.|.|  ..|:|:|..::..              ||.:|.         |..||....
  Fly   293 TTPKREASSGSG--HHPVKKRNSQQMT--------------KCQKCNGSGVVLVGQHSHASHSGV 341

  Fly   267 GDLSKHVRSHIT-----------NKPFQCSICQKTFTHIGSLNTHIRIHSGEKPYKCELCPKAFT 320
            |.   .|:..:|           :|||.|:||...|:...||.:|.::|||||.|||.:|..||.
  Fly   342 GG---SVKQSVTVKTECLSCRNPSKPFSCNICGGLFSRYSSLWSHKKLHSGEKNYKCSICGLAFA 403

  Fly   321 QSSSLMVHMRSHSVRKPHQCVQCDKGFINYSSLLLHQKTHIAPTETFICPECEREFKAEALLDEH 385
            ::    |::::|:
  Fly   404 KA----VYLKNHA---------------------------------------------------- 412

  Fly   386 MRMHTQELVYQCAICREAFRASSELVQHMKNHMGEKPFTCSLCDRSFTQSGSLNIHMRIHTGEKP 450
             |:||.|..|:|..|...|..|..|..|.:.|.||:|:.|.:||:.|.:..:|..|.||||||||
  Fly   413 -RIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCGVCDKGFARHATLWNHRRIHTGEKP 476

  Fly   451 FQCKLCDKCFTQASSLSVHMKIHAGEKPYPCPICGKSYSQQAYLNKHIQAHQM--ASAASASTSP 513
            ::|::|...|:||:.|..|.|:|:|||||.|.||..:::.:..|.:|...||.  .:|...::|.
  Fly   477 YKCEICGSAFSQAAHLKNHAKVHSGEKPYKCEICSAAFADRFALKRHRGIHQKYGQTAPRQTSSD 541

  Fly   514 GLLVAKQ 520
            |::|.||
  Fly   542 GMIVHKQ 548

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12299	NP_609448.1	COG5048	245..>501	CDD:227381	80/275 (29%)
		C2H2 Zn finger	256..276	CDD:275368	6/28 (21%)
		C2H2 Zn finger	284..304	CDD:275368	7/19 (37%)
		zf-H2C2_2	296..321	CDD:463886	14/24 (58%)
		C2H2 Zn finger	312..332	CDD:275368	5/19 (26%)
		C2H2 Zn finger	340..360	CDD:275368	0/19 (0%)
		C2H2 Zn finger	369..389	CDD:275368	1/19 (5%)
		C2H2 Zn finger	397..417	CDD:275368	6/19 (32%)
		zf-H2C2_2	409..434	CDD:463886	10/24 (42%)
		C2H2 Zn finger	425..445	CDD:275368	7/19 (37%)
		zf-H2C2_2	437..462	CDD:463886	13/24 (54%)
		C2H2 Zn finger	453..473	CDD:275368	8/19 (42%)
		C2H2 Zn finger	481..501	CDD:275368	5/19 (26%)
Clamp	NP_001014498.1	COG5048	<359..498	CDD:227381	59/195 (30%)
		C2H2 Zn finger	367..387	CDD:275368	7/19 (37%)
		C2H2 Zn finger	395..415	CDD:275368	7/76 (9%)
		zf-H2C2_2	407..432	CDD:463886	9/77 (12%)
		C2H2 Zn finger	423..443	CDD:275368	6/19 (32%)
		C2H2 Zn finger	451..471	CDD:275368	7/19 (37%)
		COG5048	475..>529	CDD:227381	22/53 (42%)
		C2H2 Zn finger	479..499	CDD:275368	8/19 (42%)
		C2H2 Zn finger	507..527	CDD:275368	5/19 (26%)