DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12299 and gldi-8

DIOPT Version :10

Sequence 1:NP_609448.1 Gene:CG12299 / 34483 FlyBaseID:FBgn0032295 Length:736 Species:Drosophila melanogaster
Sequence 2:NP_499640.1 Gene:gldi-8 / 176678 WormBaseID:WBGene00013734 Length:430 Species:Caenorhabditis elegans


Alignment Length:465 Identity:101/465 - (21%)
Similarity:166/465 - (35%) Gaps:154/465 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 SSSSSSSNSSSSSSSVPTTSNSNTQQSQESVQPLHGLVAGPGYNEFQLQ-----------MTDPR 190
            :|.||||||.:.:::. :|.|.|..:.|:.::.|          ||:.:           .::..
 Worm    17 TSCSSSSNSEADANNF-STKNKNVNEFQKLIEEL----------EFEPEDRRVPEVAEEVESEDE 70

  Fly   191 ESTSIFMVQPTVSVTPLQQLLPPAPTVSPGLGLQSTPIKRRRGRRSNIGAPVMDPALNGNQKCFQ 255
            |...:.:..|.......|.|                  :.|..||.|.         :|::|..|
 Worm    71 EEEDVQIKYPYERKDAYQDL------------------QERIERRLND---------SGDEKLEQ 108

  Fly   256 CTHCEASFPNAGDLSKHVRSHITNKPFQCSICQKTFTHIGSLNTHIRIHSGEKPYKCELCPKAFT 320
                         .:|.::|.|.....|..:.||....    ::.::.|:....:.|.:|.|||.
 Worm   109 -------------KAKELQSLIRMSQSQWKVEQKQQLE----DSLLKPHTAGSIFTCVMCSKAFP 156

  Fly   321 QSSSLMVHM-RSHSV-RKPHQCVQCDKGFINYSSLLLHQKTHIAPTETFICPECEREFKAEALLD 383
            .:.:|.:|. :.|.: |..|:|..|.|.:....:|..|...|:...:   |..|...|::|..|.
 Worm   157 NAEALQIHTDQVHDLSRLKHRCKLCGKAYKRKKNLDAHMALHLKEIQ---CDNCSLVFQSEKSLQ 218

  Fly   384 EHMRMHTQELVYQ-------CAICREAFRASSELVQHMKNH---------MGEK----------- 421
            .|:..|.||...:       |:||:|.|.::|     :|.|         :.||           
 Worm   219 SHIIRHHQEDADELEVWKAPCSICKELFPSTS-----VKTHEWYCKNREKIIEKQRVSKILKVQS 278

  Fly   422 ---------------------PFT---------CSLCDRSFTQSGSLNIHM-RIHTGEK------ 449
                                 |.|         |.:|..||....|:..|: |.|...|      
 Worm   279 LPSSPALSTVSYASFSSCQPGPITSPVSYRDKSCQVCGESFASRQSMLRHVGRKHPDAKNDPNVT 343

  Fly   450 ------------PFQCKLCDKCFTQASSLSVH-MKIHAGEKPYPCPICGKSYSQQAYLNKHI-QA 500
                        |:.|..|.|.||..::||.| .::|:....:.|.||.|||...:.|.||| :.
 Worm   344 AVRYISAESPKHPYACIECGKRFTTVTALSTHKARVHSQSNRFECTICHKSYPVPSELRKHIKRV 408

  Fly   501 HQMASAASAS 510
            |:..:..|.|
 Worm   409 HEKDAPKSRS 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12299NP_609448.1 COG5048 245..>501 CDD:227381 76/335 (23%)
C2H2 Zn finger 256..276 CDD:275368 1/19 (5%)
C2H2 Zn finger 284..304 CDD:275368 2/19 (11%)
zf-H2C2_2 296..321 CDD:463886 6/24 (25%)
C2H2 Zn finger 312..332 CDD:275368 7/20 (35%)
C2H2 Zn finger 340..360 CDD:275368 5/19 (26%)
C2H2 Zn finger 369..389 CDD:275368 6/19 (32%)
C2H2 Zn finger 397..417 CDD:275368 7/19 (37%)
zf-H2C2_2 409..434 CDD:463886 10/74 (14%)
C2H2 Zn finger 425..445 CDD:275368 7/20 (35%)
zf-H2C2_2 437..462 CDD:463886 10/43 (23%)
C2H2 Zn finger 453..473 CDD:275368 8/20 (40%)
C2H2 Zn finger 481..501 CDD:275368 10/20 (50%)
gldi-8NP_499640.1 C2H2 Zn finger 148..169 CDD:275368 7/20 (35%)
zf-C2H2 176..198 CDD:395048 6/21 (29%)
C2H2 Zn finger 178..198 CDD:275368 5/19 (26%)
C2H2 Zn finger 204..224 CDD:275368 6/19 (32%)
C2H2 Zn finger 312..333 CDD:275368 7/20 (35%)
C2H2 Zn finger 359..380 CDD:275368 8/20 (40%)
C2H2 Zn finger 388..409 CDD:275368 10/20 (50%)

Return to query results.
Submit another query.