DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vha16-5 and AVA-P1

DIOPT Version :10

Sequence 1:NP_609447.1 Gene:Vha16-5 / 34482 FlyBaseID:FBgn0032294 Length:193 Species:Drosophila melanogaster
Sequence 2:NP_195198.1 Gene:AVA-P1 / 829624 AraportID:AT4G34720 Length:164 Species:Arabidopsis thaliana


Alignment Length:432 Identity:78/432 - (18%)
Similarity:121/432 - (28%) Gaps:180/432 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 GYGASVLNAMRCKDGGIEFPLVLGRDF----------CGEIVQKGLGISSRELEVGDEVWGVVPV 106
            |:|:||.|:.. ..|.....|....|.          .|:.....||.||....:|      :|:
plant   574 GFGSSVGNSAG-SSGSRRDSLSASSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIG------MPL 631

  Fly   107 HLQGCHADYVVVEKYCLFKKPSNLSKIDASAILYAGLTAWSGLYITG------------------ 153
            ..|        ...:.|...||..|...:|::...|||..||.||:.                  
plant   632 PSQ--------TSGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAAPGAEAKYRSAASTSSFF 688

  Fly   154 ---------------------------------------HLGDLLGAISPVGGGAGKKVLVLGAA 179
                                                   .|.||:|.|            |..:.
plant   689 SSNSQLFPPSRLRYNRADIMPSGRSRLLEDFRNNRFPNLQLRDLMGHI------------VEFSQ 741

  Fly   180 GGVGTLAVQMLL-----AEGVEVFATCSPDAMQMVNNLGVKYVLDYTDPAHVQNVASVGRFDIVL 239
            ...|:..:|..|     ||...||:.....|.|::.::...||        :|.....|..|..|
plant   742 DQHGSRFIQQKLERASPAERQLVFSEILQAAYQLMTDVFGNYV--------IQKFFEFGSMDQKL 798

  Fly   240 DCAGKGTEYANEV-PWLYDQY-------------ITFNSPVLKNIDADGFAAGMYQNALNLV--- 287
            ..|   |.....| |.....|             |...|.:::.:|.........||..::|   
plant   799 ALA---TRIRGHVLPLALQMYGCRVIQKALESISIDQQSEMVRELDGHVLKCVKDQNGNHVVQKC 860

  Fly   288 ----------------RNNAAALSTRQGLVKWGYFVPAPQGIAYLQRLAE---KGKLLPVVEK-- 331
                            :.....|||.            |.|...:||:.|   ..:.||::|:  
plant   861 IECVQPQSLQFIIDAFKGQVYVLSTH------------PYGCRVIQRILEHCTPEQTLPILEELH 913

  Fly   332 ------------------VFPYGSTPEAYERVAQKHLRGKVV 355
                              |..:|.:.:..:.|::  :||||:
plant   914 QSTEQLVQDQYGNYVIQHVLEHGRSDDKSKIVSE--VRGKVL 953

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vha16-5NP_609447.1 PRK13469 46..153 CDD:469780 28/110 (25%)
ATP-synt_Vo_c_ATP6C_rpt2 123..188 CDD:349416 19/121 (16%)
AVA-P1NP_195198.1 V_ATP_synt_C 12..120 CDD:130170
ATP-synt_Vo_c_ATP6C_rpt2 88..155 CDD:349416
Blue background indicates that the domain is not in the aligned region.

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