DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup107 and npp-5

DIOPT Version :9

Sequence 1:NP_609446.1 Gene:Nup107 / 34481 FlyBaseID:FBgn0027868 Length:845 Species:Drosophila melanogaster
Sequence 2:NP_496481.1 Gene:npp-5 / 174779 WormBaseID:WBGene00003791 Length:813 Species:Caenorhabditis elegans


Alignment Length:847 Identity:170/847 - (20%)
Similarity:279/847 - (32%) Gaps:255/847 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 WRLLHALFYDRILLQTDRQADDEMQDGPTLGGSEKEVIQQLYA------------LNATLREY-- 181
            |..||.::           ::.|||......||......|.||            ..|...||  
 Worm    68 WTRLHEIY-----------SEVEMQTRKLPAGSNYSASSQKYANEAVQIASVLSIYTALAHEYDE 121

  Fly   182 --------QLVVD------------WLEACYDRGEQQNPLHAHDR--------------MMAWEN 212
                    :|||:            |.|...  .|||......|:              |||.:.
 Worm   122 TVEVSLLSKLVVEDVEFRRIYALLLWSEKAI--SEQQYEKGLGDKVRKLEGIKSSRINSMMALKR 184

  Fly   213 TLFQLENLQGAAFGKGHKIVTRLDPDAP-VREKRPLHALDEEDNLRLSRAIFELIRAGRVDDGLK 276
            ..|...|....|         .|||||| .:|.:.|..:       .....|:|||:|.......
 Worm   185 PTFGAANAPKDA---------SLDPDAPGTKEDQALEQM-------AMNVFFQLIRSGETSKAAN 233

  Fly   277 LCKHFGQTWRAAILEGWRLHEDPNFEQNVSVLHEKL--PIEGNPRRDIWKRCAWMLADSKNYDEY 339
            |....|.   .||....:||         |:|...|  |:|               |..:|:.||
 Worm   234 LAIDLGM---GAIGAQLQLH---------SMLRNPLDIPLE---------------ASKQNFGEY 271

  Fly   340 SRATAGVFSGHLGSLKTLLHSNWHDLLWAHLKVQIDIRVESEIRGCCLKNYQPM-------PDDY 397
            .|:....:......|......:..|..|..:         |.|||    |.|||       .:..
 Worm   272 KRSRRAKYYQMTQKLIEQSQGSEDDAYWMLI---------SAIRG----NIQPMLKAGKSVIEKV 323

  Fly   398 W--------------NGRMTMEQIFEELNV-AKDASVRDFAQSQLGIIQRHLIL-----DTCGEL 442
            |              .|.||.|.|....|| ....|:.|..:|:....:...||     |...:.
 Worm   324 WAYANSAVLARILAAEGAMTQETISTLFNVPLTSKSILDELRSEADRTKEVYILLRVIDDMLNDD 388

  Fly   443 IQHMVRWVEKDTSQQSPH----QLRFMA-----HIVLFLRQIGRVEQERQAEKIVAAYVEALIAR 498
            |:.:.::..:...:..|:    |:..:|     |:|......| .|.......::....:.|.||
 Worm   389 IEDLYKFANETVGEFVPNDKNCQVNMLALDIFFHLVAVSYASG-FEPNDDGNAVIILGFDDLRAR 452

  Fly   499 ----GEPQLIAYYTASLSNPLQVQLYSRFLEQVEQKRPRELAVDAALQAGLDVEQITRVTVQNIR 559
                ...::.|:|:..|...:::......::.|:....||:..::..|:.:|..:.....::.||
 Worm   453 SGTSSHKKMAAFYSRFLPEDMKLPEIVETMKAVDSDEEREILAESLKQSDIDFGRCACTLIEQIR 517

  Fly   560 LAHQPLGEFGEPQSGEISAIDQRKISALE-------WLIHLPEQRG-ELLWQANAMIRTYLASSK 616
                              ..|:.|:..||       ||:...|:.. ..|.:.|.::|..:.|:.
 Worm   518 ------------------KDDKTKVVTLEEQIDHWHWLLIGGEETALAALEECNRLVRKVMLSTP 564

  Fly   617 VE--CMRQTFRM-----VPADIVQ------QLVSLY--GSVDNIPPREECCLK--EYLCYKAYLS 664
            ::  .:||..|.     ||..:.|      .::||.  |::....|..:..:.  |:...:.|  
 Worm   565 IDESVIRQIIRKALHFEVPKLLSQAVENEATVLSLITDGTLFEQKPGSQLAINKIEHAALEFY-- 627

  Fly   665 GVDSFVEWNRLQQNRPKK--------PQTSHAAS------SQDNFT------ERMASERKEQAHR 709
            |:.|||:.|........|        |.|....|      ..||.|      ......|.||..|
 Worm   628 GLCSFVDVNNFMITIALKLGLMFKYTPITDDELSMIGGVKRLDNTTAADWEASLRVRARAEQTLR 692

  Fly   710 SEVVR---WEHKVK----EQAKQTI-----ELLYNVLMFPDKGWLVDPFIAKLPENAVQLSWDHR 762
            .||::   .||..:    :|...|:     .|:.|:.:.|:  :.:.|.....|...      ||
 Worm   693 EEVLKKRAAEHNTRVGMVQQHLDTVLPMLRGLVNNIGVRPE--YFLSPRANGDPMRV------HR 749

  Fly   763 LLQMEKLRSICIPEIALFLNEVMFKSGDFAGCVRLADEISSENRQL-----YKVYTKHKLAELLA 822
             .:::::|::.:|:..:.|.:...:..|   .....|..:|.|..|     :.|:.|...|||..
 Worm   750 -KEIQEIRNLFLPQFFILLAQAAVRLDD---TTNFNDFFTSFNNDLGLDQEWMVFIKAFYAELNL 810

  Fly   823 KI 824
            |:
 Worm   811 KV 812

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup107NP_609446.1 Nup84_Nup100 121..828 CDD:309305 170/847 (20%)
npp-5NP_496481.1 Nup84_Nup100 117..>504 CDD:309305 89/445 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158414
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1964
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_103478
Panther 1 1.100 - - LDO PTHR13003
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R849
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.860

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