DRSC/TRiP Functional Genomics Resources

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Protein Alignment EMC3 and ercc8

DIOPT Version :10

Sequence 1:NP_609444.1 Gene:EMC3 / 34479 FlyBaseID:FBgn0032292 Length:247 Species:Drosophila melanogaster
Sequence 2:NP_001017179.1 Gene:ercc8 / 549933 XenbaseID:XB-GENE-1000476 Length:399 Species:Xenopus tropicalis


Alignment Length:26 Identity:8/26 - (30%)
Similarity:11/26 - (42%) Gaps:9/26 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   205 MPQDPK---------AAFKAEWEALE 221
            :.:|||         .|||..|.:.|
 Frog   371 LDEDPKKSGHQAHINPAFKDAWSSSE 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EMC3NP_609444.1 EMC3_TMCO1 3..185 CDD:396507
ercc8NP_001017179.1 WD40 42..362 CDD:238121
WD40 repeat 47..90 CDD:293791
WD40 repeat 102..138 CDD:293791
WD40 repeat 145..183 CDD:293791
WD40 repeat 189..227 CDD:293791
WD40 repeat 249..288 CDD:293791
WD40 repeat 295..320 CDD:293791
WD40 repeat 338..362 CDD:293791
Blue background indicates that the domain is not in the aligned region.

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