DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trim9 and Trim42

DIOPT Version :10

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_084495.2 Gene:Trim42 / 78911 MGIID:1926161 Length:723 Species:Mus musculus


Alignment Length:720 Identity:137/720 - (19%)
Similarity:220/720 - (30%) Gaps:267/720 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LRCPTCKQLYANPVLLPCFHALCLGCALDIQTPYSPGSALPGAVNGAGAASAAGHNGLHGNGGGA 69
            |.||.|.:|..:..:|||.|:||..|...:|                                  
Mouse   144 LTCPMCNRLRLHSFMLPCNHSLCEKCLRQLQ---------------------------------- 174

  Fly    70 GGGAAAPVTNPNGPGTRHSSHSSAASTASSNTGSESVTSDQDQSDKVSIFSEADSGVVCCSNTSR 134
                            :|:                .||.:                         
Mouse   175 ----------------KHA----------------EVTEN------------------------- 182

  Fly   135 PVSYAGTGLLPGVGNVVAPPGAAYCLTCPLCRKLVFFDDGGVRNLPTYRAMEAIVDRFCAREA-- 197
                                  .:.|.||:|.:..........:||.......:..|:..:..  
Mouse   183 ----------------------FFILICPMCSRSHCMPYSHQMHLPENYLRGRLTKRYMQQHGYL 225

  Fly   198 ----------LRCQMCETDPKVASLICEQCEIRYCDACRELTHPARGPLAKHTLVKPRGAAQQRE 252
                      :.||:|.| .::|...|..|.:..|:.|.:..| :...:..|..| ...|..|.|
Mouse   226 KWRFDRSSGPILCQVCRT-RRIAYKRCVTCRLNLCNDCLKAFH-SDVAMQDHVFV-DTSAEDQDE 287

  Fly   253 SVCGEHEET-LSQYCLSCKAPACGLCIGELRHQAHDVQSINVTCKAQKTELSHNLQQLSEKARST 316
            .:|..|..: :::||.|.....|..|.... |..||..|:...|              ||::.:.
Mouse   288 KICIHHPSSRINEYCRSDNQLLCAFCKIAF-HNGHDTVSLIDAC--------------SERSAAL 337

  Fly   317 TEFIQRLKGMSDKVTESCMEFERL---VHAQCEALIQAIHDRREYL-LEAIRMDKDTKIRILKDQ 377
            ...|.:.|.:..::....|||..|   ..|..||..:.:  |..:| |.||..:|:   :|:.:|
Mouse   338 FSAIAKFKAVRYEIDNDLMEFNILKSSFKADKEAKRKEV--RNGFLKLRAILQEKE---KIIMEQ 397

  Fly   378 QSN---------------CTGKLQQTTGLIQFCIEALKETDSAAFLQVGSMLINRVTNTDMTWHQ 427
            ..|               .|.|:.:..|||.:..||||||...||||...:|::::       .:
Mouse   398 IENLEVSRQKEIEKYVYITTMKVNEMDGLIAYSKEALKETGQVAFLQSAKILVDQI-------EE 455

  Fly   428 EVTNA-AP----RVSPIVDLTLDDAALARAIDNLNFI--QMRAVKDGDERCPAAPMTPTILPSDC 485
            .:.|. .|    |:..:..:.||.|.|:.||..| |.  ..:|...||.           |||..
Mouse   456 GIQNTFRPDPQLRLHSLHCIPLDFAELSNAIHEL-FPTGPKKACSSGDS-----------LPSQY 508

  Fly   486 SAEN-----NSVTVAWQPPNHSFVEGYVLEL-----------DDGSGGEFREVYCGKETIC---T 531
            ...:     ..||.:    .|||....:.:.           |.|..|  .|.|...::..   |
Mouse   509 PIHSEMMIARKVTFS----THSFGNQQIYQRSSSLISFNTANDKGKMG--LENYGRAQSAAPAKT 567

  Fly   532 VDGLH-----------------FNSMYNARVKAFNSAGE-GEYSELIGLQTAEVAWFTFDPVLSG 578
            .|||:                 |::.|:....:..:.|. ..|..|:..:.|:|.|         
Mouse   568 TDGLYTYWSATGETQPPQSSNSFHNWYSFNDTSVRTPGPIVIYQTLVYPRAAKVYW--------- 623

  Fly   579 GAGSGLIFSKNNATVSVEGWE-----------HRVALGSVGFSRGVHYWEFTIDNYTADTDPAFG 632
                      ...|..|:.:|           :.|.....|..|.:......:.|.|.:|:..|.
Mouse   624 ----------TCPTEDVDSFEMEFYELVTTPPNNVRTELCGQIRDILQQNLELHNLTPNTEYLFK 678

  Fly   633 VARID 637
            |..|:
Mouse   679 VRAIN 683

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9-like_C-I 2..>35 CDD:438238 12/29 (41%)
Bbox1_TRIM9-like_C-I 199..244 CDD:380861 12/44 (27%)
Bbox2_TRIM9-like 255..291 CDD:380822 10/36 (28%)
CC_brat-like 298..420 CDD:475168 36/140 (26%)
FN3 472..564 CDD:238020 22/128 (17%)
SPRY_PRY_TRIM67_9 561..735 CDD:293947 15/88 (17%)
Trim42NP_084495.2 NosR <4..81 CDD:443108
RING-HC_TRIM42_C-III 139..196 CDD:438240 20/164 (12%)
Bbox_SF 235..280 CDD:469587 12/47 (26%)
Bbox_SF 287..326 CDD:469587 11/39 (28%)
TOPEUc <341..432 CDD:214661 23/95 (24%)
FN3 612..698 CDD:238020 16/91 (18%)
Blue background indicates that the domain is not in the aligned region.

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