DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trim9 and fsd1

DIOPT Version :9

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_001038582.1 Gene:fsd1 / 566722 ZFINID:ZDB-GENE-060503-218 Length:495 Species:Danio rerio


Alignment Length:510 Identity:121/510 - (23%)
Similarity:200/510 - (39%) Gaps:107/510 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   298 QKTELSHNLQQLSEKARSTTEFIQRLKGMSDKVTESCMEFERLVHAQCEALIQAIHDRREYLLEA 362
            ||..|...:..|:.|......||..||...:.:..:....:..:.::..:|...:.|.:|.::..
Zfish     4 QKESLRKIITTLALKNEEIQNFICSLKQSLENLEANSNRVQEDLESEFSSLHSVLDDLKEGMVTR 68

  Fly   363 IRMDKDTKIRILKDQQSNCTGKLQQTTGLIQFCIEALKETDSAAFLQVGSMLINRVTNTDMTWHQ 427
            |:.::.::...|:.|...||..|:.:..|::|..:.|..:::.:|.|....:.:.||        
Zfish    69 IKQERASRTYELQSQLGACTKALESSEELLEFANQTLCSSENDSFTQAAKDIKDSVT-------- 125

  Fly   428 EVTNAAPRVSPIVDLTLDDAALARAIDNLN-----FIQMRAVKDGDERCPAAPMTPTILPSDCSA 487
                    ::|...|:|.    |:|.|::|     |...|.:.......| .|.||.|..:||..
Zfish   126 --------MAPAFRLSLK----AKASDSMNHMMVDFTHERNLLQSITFLP-VPATPEIHVADCQV 177

  Fly   488 ENNSVTVAWQ-PPNHSFVEGYVLE---LDDGSGGEFREVYCG------KETICTVDGLHFNSMY- 541
            .:|:|||.|. |...|.::.|:||   .:.......||.|..      |||..|:.|:.|::.| 
Zfish   178 FDNTVTVVWTLPEPDSKIDHYILEHRKTNHEGPPRAREDYPWMVVEGIKETEYTLTGVRFDTRYM 242

  Fly   542 NARVKAFNSAGEGEYSELIGLQT--------------------AEVAWFTFDPVLSGG------- 579
            ..||||.|.|..||:||.:.|:|                    ..|.|.:     |||       
Zfish   243 TFRVKACNKAVAGEFSEPVTLETHAFVFKLDASSSHQNLKVEDLSVEWDS-----SGGKVAVQDI 302

  Fly   580 --------------AGSGLIFSKN--NATVSVEGW--EHRVALGSVGFSRGVHYWEFTIDNYTAD 626
                          |.:.::..|.  :|.|..:.:  |....||......|.||||...|.    
Zfish   303 RKEKNRTNSPMHSPARTAMMSPKRAPSARVGRDRFTAESYTVLGDTMIDAGQHYWEVRFDK---- 363

  Fly   627 TDPAF--GVARIDVARNKMLGKDEKSFAMYIDRQRSWFQ------HNSIHERRVEGGITTGSTIG 683
            ...||  |||...:.|...|||...|:.::::   :|.|      ||: ..|.::..|.  ..||
Zfish   364 ESKAFAAGVALRSLGRFDQLGKSNASWCIHLN---NWLQQSLTAKHNN-KARTLDCSIP--DRIG 422

  Fly   684 VLLDLERHTLSFLVNEMPQGSVAFRDLY-GVFYPAVSINRGVTLTMHTAMDAPKM 737
            :..:.|..||||..:........||..: ....||..:..| :.::.|.:..|.:
Zfish   423 IYCNYEEGTLSFYNSRNKTLLHTFRTKFQQPVIPAFMVWNG-SFSVQTGLQVPSI 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9_like_C-I 2..37 CDD:319490
zf-B_box 250..291 CDD:306989
ClassIIa_HDAC_Gln-rich-N 298..420 CDD:330228 24/121 (20%)
FN3 472..564 CDD:238020 38/102 (37%)
SPRY_PRY_TRIM67_9 561..735 CDD:293947 49/227 (22%)
fsd1NP_001038582.1 iSH2_PI3K_IA_R 4..127 CDD:304922 25/138 (18%)
FN3 165..265 CDD:238020 37/99 (37%)
SPRY_PRY_FSD1 270..475 CDD:293958 47/220 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 306..332 3/25 (12%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24099
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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