DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trim9 and si:ch211-114c12.5

DIOPT Version :10

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:XP_021332022.1 Gene:si:ch211-114c12.5 / 565476 ZFINID:ZDB-GENE-060526-13 Length:419 Species:Danio rerio


Alignment Length:528 Identity:104/528 - (19%)
Similarity:172/528 - (32%) Gaps:185/528 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   270 KAPACGL--CIGELRH-------QAHDVQSINVTCKAQKTELSHNLQQLSEKARSTTEFIQRLKG 325
            :||..||  .||.:..       |||.    :|..|:.::....:|:.| ...:...:||.:.|.
Zfish    12 EAPEAGLSNSIGAVTWTLPDEGLQAHS----SVPSKSSQSPRQKDLKDL-RSLQECVKFITQWKQ 71

  Fly   326 MSDKVTESCMEFERLVHAQCEALIQAIHDRREYLLEAIRMDKDTKIRILKDQQSNCTGKLQQTTG 390
            ..|:|.:.....:....|...|..:::...|:.:||..:     ::|.:....|..|.:.::.|.
Zfish    72 QVDQVCKPGANADEGPGASVLAEPRSLEQCRKLILEWAQ-----ELRKVDSLFSEGTWRKERDTS 131

  Fly   391 LIQFCIEALKET--DSAAFLQVGSMLINRVTNTDMTWHQEVTNAAPRVSP--------IVDLTLD 445
            ..|      ||:  |||..::          ...|.|.:|:...:.|...        :..|.|.
Zfish   132 WEQ------KESQADSAKHME----------QKIMEWAKELQAVSERCGVMRQELAQFLKQLELK 180

  Fly   446 DAALARAIDNLNFIQMRAVKDGDERCPAAPM-------------TPTILPSDC-----SAENNSV 492
            ...:...:..|.||....:|...:  ...|.             ||..:|:..     ||   ||
Zfish   181 KRKILTLLPFLEFITWSLLKQDSQ--GVVPQLWLLSKHRTWKTETPKYIPNSVWRWIRSA---SV 240

  Fly   493 TVAWQP-PNHSFVEGYVLELDDGSGGEFREVYCGKETICTVDGLHFNSMYNARVKAFNSAGEGEY 556
            .::..| .||.:     |:|.|.                             :.|...:..|.|.
Zfish   241 DISLDPMTNHPW-----LQLSDD-----------------------------KKKVQEALSETEV 271

  Fly   557 SELIGLQTAEVAWFTFDPVLSGGAGSGLIFSKN--NATVSVEGWEHRVALGSVGFSRGVHYWEFT 619
            |                            |||.  ::...|.|||        |.:.|.:|||..
Zfish   272 S----------------------------FSKQRFDSWPCVLGWE--------GLTSGRYYWEVD 300

  Fly   620 IDNYTADTDPAFGVARIDV--ARNKMLGK-----DEKSFAMYIDRQRSWFQHNSIHERRVEGGIT 677
            |.|.        |..||.|  |.:|..|:     .|..:.::    :|..|..:..:...|..:|
Zfish   301 IANK--------GYWRIGVTTASSKRHGRSPMNPSEGFWTIW----KSTRQFYACTKPETELPLT 353

  Fly   678 -TGSTIGVLLDLER------------HTLSFLVNEMPQGSVAFRD-LYGVFYPAVSINRGVTLTM 728
             ....:||.||.|.            |..:|..|        ||: |:.:|.|   ::....:|:
Zfish   354 LVPKKLGVYLDYEEGQVSFYNVETRTHIFTFTAN--------FRETLFPLFAP---LDGRTLITL 407

  Fly   729 HTAMDAPK 736
            .||...|:
Zfish   408 STAEVNPE 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9-like_C-I 2..>35 CDD:438238
Bbox1_TRIM9-like_C-I 199..244 CDD:380861
Bbox2_TRIM9-like 255..291 CDD:380822 9/29 (31%)
CC_brat-like 298..420 CDD:475168 22/123 (18%)
FN3 472..564 CDD:238020 18/110 (16%)
SPRY_PRY_TRIM67_9 561..735 CDD:293947 42/196 (21%)
si:ch211-114c12.5XP_021332022.1 SPRY_PRY_C-I_1 241..398 CDD:293968 48/246 (20%)
Blue background indicates that the domain is not in the aligned region.

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