DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trim9 and trim8b

DIOPT Version :10

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_001135847.1 Gene:trim8b / 559967 ZFINID:ZDB-GENE-030131-4325 Length:564 Species:Danio rerio


Alignment Length:486 Identity:87/486 - (17%)
Similarity:151/486 - (31%) Gaps:179/486 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEDELRCPTCKQLYANPVLLPCFHALCLGCALDIQTPYSPGSALPGAVNGAGAASAAGHNGLHGN 65
            :|:||.||.|..:::.||.|||.|..|..|                 :|.|.:..|         
Zfish     9 LEEELICPICLNVFSEPVQLPCKHNFCRMC-----------------INEAWSKDA--------- 47

  Fly    66 GGGAGGGAAAPVTNPNGPGTRHSSHSSAASTASSNTGSESVTSDQDQSDKVSIFSEADSGVVCCS 130
                 |....|..|                  ::.|...::..:...|:.|..|:..        
Zfish    48 -----GMVRCPECN------------------NAYTQKPALEKNHKLSNIVEKFNAL-------- 81

  Fly   131 NTSRPVSYAGTGLLPGVGNVVAPPGAAYCLTCPLCRKLVFFDDGGVRNLPTYRAMEAIVDRFCAR 195
                              ||...|...:|:   |||:                            
Zfish    82 ------------------NVEKTPAVLHCI---LCRR---------------------------- 97

  Fly   196 EALRCQMCETDPKVASLICEQCEIRYCDA--CRELTHPARGPLAKHTLVKPRGAAQQRESVCGEH 258
                     ..|..|..:|.:|....|.:  ...|..|:..  |.|.||   .|...|...|.:|
Zfish    98 ---------GPPLQAQKVCLRCNAPCCHSHVQTHLQQPSSN--AGHLLV---DAEDVRAWSCPQH 148

  Fly   259 EETLSQYCLSCKAPACGLCIGE--LRHQAHDVQSINVTCKAQKTELSHNLQQLSEKARSTTEFIQ 321
            :|....:|.:.....|..|...  ..:..|.|..|.|.....:..|.....::.::.:...|.:.
Zfish   149 DEYRLYHCETEHVAVCQYCCFSRCATNHGHAVCDIEVRRNDIRQMLIKQQDRIEDRVQDIEEQLY 213

  Fly   322 RLKGMSDKVTESCMEFERLVHAQCEALIQAIHDRREYLLEAIRMDKDTKIRILKDQQSNCTGKLQ 386
            :|:  |||    |:..:::.|.:.|..:|  :.:.:.|||.   |....:.:|....|       
Zfish   214 KLE--SDK----CLMEDKVQHLKEEVQLQ--YQKMQQLLEE---DLGKTLEVLDKAHS------- 260

  Fly   387 QTTGLIQFCIEALKETDSAAFLQVGSMLINRVTNTDMTWHQEVTNAAPRVSPIVDLTLDDAALAR 451
                  :||.|     :||..||:               ||:...|...:|.| .:..|.|    
Zfish   261 ------KFCQE-----NSAQALQL---------------HQKQQEAKKLLSSI-QMVFDKA---- 294

  Fly   452 AIDNLNFIQ----MRAVKDGDERCPAAPMTP 478
              :::.|::    ::.:.|..:....:.::|
Zfish   295 --EDIGFMKNTKSVKILMDRSQSYVGSTLSP 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9-like_C-I 2..>35 CDD:438238 14/32 (44%)
Bbox1_TRIM9-like_C-I 199..244 CDD:380861 11/46 (24%)
Bbox2_TRIM9-like 255..291 CDD:380822 8/37 (22%)
CC_brat-like 298..420 CDD:475168 23/121 (19%)
FN3 472..564 CDD:238020 1/7 (14%)
SPRY_PRY_TRIM67_9 561..735 CDD:293947
trim8bNP_001135847.1 RING-HC_TRIM8_C-V 2..68 CDD:438242 21/107 (20%)
Bbox1_TRIM8_C-V 90..137 CDD:380896 15/91 (16%)
Bbox2_TRIM8_C-V 142..184 CDD:380821 8/41 (20%)
PRK12704 182..>288 CDD:237177 30/150 (20%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.