DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trim9 and trim8b

DIOPT Version :9

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_001038379.1 Gene:trim8b / 559967 ZFINID:ZDB-GENE-030131-4325 Length:564 Species:Danio rerio


Alignment Length:486 Identity:87/486 - (17%)
Similarity:151/486 - (31%) Gaps:179/486 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEDELRCPTCKQLYANPVLLPCFHALCLGCALDIQTPYSPGSALPGAVNGAGAASAAGHNGLHGN 65
            :|:||.||.|..:::.||.|||.|..|..|                 :|.|.:..|         
Zfish     9 LEEELICPICLNVFSEPVQLPCKHNFCRMC-----------------INEAWSKDA--------- 47

  Fly    66 GGGAGGGAAAPVTNPNGPGTRHSSHSSAASTASSNTGSESVTSDQDQSDKVSIFSEADSGVVCCS 130
                 |....|..|                  ::.|...::..:...|:.|..|:..        
Zfish    48 -----GMVRCPECN------------------NAYTQKPALEKNHKLSNIVEKFNAL-------- 81

  Fly   131 NTSRPVSYAGTGLLPGVGNVVAPPGAAYCLTCPLCRKLVFFDDGGVRNLPTYRAMEAIVDRFCAR 195
                              ||...|...:|:   |||:                            
Zfish    82 ------------------NVEKTPAVLHCI---LCRR---------------------------- 97

  Fly   196 EALRCQMCETDPKVASLICEQCEIRYCDA--CRELTHPARGPLAKHTLVKPRGAAQQRESVCGEH 258
                     ..|..|..:|.:|....|.:  ...|..|:..  |.|.||   .|...|...|.:|
Zfish    98 ---------GPPLQAQKVCLRCNAPCCHSHVQTHLQQPSSN--AGHLLV---DAEDVRAWSCPQH 148

  Fly   259 EETLSQYCLSCKAPACGLCIGE--LRHQAHDVQSINVTCKAQKTELSHNLQQLSEKARSTTEFIQ 321
            :|....:|.:.....|..|...  ..:..|.|..|.|.....:..|.....::.::.:...|.:.
Zfish   149 DEYRLYHCETEHVAVCQYCCFSRCATNHGHAVCDIEVRRNDIRQMLIKQQDRIEDRVQDIEEQLY 213

  Fly   322 RLKGMSDKVTESCMEFERLVHAQCEALIQAIHDRREYLLEAIRMDKDTKIRILKDQQSNCTGKLQ 386
            :|:  |||    |:..:::.|.:.|..:|  :.:.:.|||.   |....:.:|....|       
Zfish   214 KLE--SDK----CLMEDKVQHLKEEVQLQ--YQKMQQLLEE---DLGKTLEVLDKAHS------- 260

  Fly   387 QTTGLIQFCIEALKETDSAAFLQVGSMLINRVTNTDMTWHQEVTNAAPRVSPIVDLTLDDAALAR 451
                  :||.|     :||..||:               ||:...|...:|.| .:..|.|    
Zfish   261 ------KFCQE-----NSAQALQL---------------HQKQQEAKKLLSSI-QMVFDKA---- 294

  Fly   452 AIDNLNFIQ----MRAVKDGDERCPAAPMTP 478
              :::.|::    ::.:.|..:....:.::|
Zfish   295 --EDIGFMKNTKSVKILMDRSQSYVGSTLSP 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9_like_C-I 2..37 CDD:319490 14/34 (41%)
zf-B_box 250..291 CDD:306989 9/42 (21%)
ClassIIa_HDAC_Gln-rich-N 298..420 CDD:330228 23/121 (19%)
FN3 472..564 CDD:238020 1/7 (14%)
SPRY_PRY_TRIM67_9 561..735 CDD:293947
trim8bNP_001038379.1 RING 15..55 CDD:302633 16/70 (23%)
PHA02277 <196..279 CDD:107164 24/126 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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