DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trim9 and trim72

DIOPT Version :10

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_001008188.1 Gene:trim72 / 493550 XenbaseID:XB-GENE-5896447 Length:477 Species:Xenopus tropicalis


Alignment Length:605 Identity:111/605 - (18%)
Similarity:172/605 - (28%) Gaps:261/605 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 LTCPLCRKLVFFDDGGVRNLPTYRAMEAIVDRFCAREALRCQMCETD-PK----VASLICEQCEI 219
            ||||||.:|                ..|.|...|....  ||.|.|. ||    ..|..|..|:.
 Frog    14 LTCPLCLEL----------------FRAPVTPECGHTF--CQGCLTGAPKNQDQNGSTPCPTCQT 60

  Fly   220 ----RYCDACRELTHPARGPLAKHTLVKPRGAAQQRESVCGEHEETLSQYCLSCKAPACGLCIGE 280
                ......|:|.|     |.:.....|:|.       |.||.:.||.||...|...||:|...
 Frog    61 PSRPETLQINRQLEH-----LVQSFKQVPKGH-------CLEHLDPLSVYCEQDKELICGVCASL 113

  Fly   281 LRHQAHDVQSINVTCKAQKTELSHNLQQ------------------LSEKARSTTEFIQRLKG-- 325
            .:|:.|::    :|......:|...|.|                  |..:.....:.:.|.||  
 Frog   114 GKHKGHNI----ITAAEAYAKLKRQLPQQQVILQEARLKKEKTVAVLDRQVAEVQDTVSRFKGNV 174

  Fly   326 ----------MSDKVTESCMEFERLVHAQCEALIQAIHDRREYLLEAIRMDKDTKIRILKDQQSN 380
                      :|........|.:...|...|||:........||.:..:||     .:|||.:|.
 Frog   175 KHQLNAMRSYLSIMEASLSKEADNAEHTATEALLVERKTMGHYLDQLRQMD-----GVLKDVESQ 234

  Fly   381 CTGKLQQTTGLIQFCIEALKETDSAAFLQVGSMLINRVTNTDMTWHQEVTNAAP--RVSPIVDLT 443
                 :||..|.::|:.|.:              :|::          :..:.|  |:...:.:.
 Frog   235 -----EQTEFLRKYCVVAAR--------------LNKI----------LAESPPPGRLDIQLPII 270

  Fly   444 LDD----------AALARAIDNLNF----IQMRAVKDGDERCPAAPMTPTILPSDCSAENNSVTV 494
            .|:          .||..|::||.|    .|...|...|.:           ..:||.:..||: 
 Frog   271 SDEFKFQVWRKMFRALMPALENLTFDPDTAQQNLVVFSDGK-----------SVECSEQKQSVS- 323

  Fly   495 AWQPPNHSFVEGYVLELDDGSGGEFREVYCGKETICTVDGLHFNSMYNARVKAFNSAGEGEYSEL 559
              ..||.                                                          
 Frog   324 --DEPNR---------------------------------------------------------- 328

  Fly   560 IGLQTAEVAWFTFDPVLSGGAGSGLIFSKNNATVSVEGWEHRVALGSVGFSRGVHYWEFTIDNYT 624
                                      |.|:|..||.|           .|:.|.||||..:::  
 Frog   329 --------------------------FDKSNCLVSKE-----------SFTEGEHYWEVLVED-- 354

  Fly   625 ADTDPAFGVARIDVARNK-------------MLG-KDEKSFAMYIDRQRSWFQHNSIHERRVEGG 675
               .|.:.:..|....|:             ::| |:.|.:..:.:::..       ...|||| 
 Frog   355 ---KPRWALGVISETANRKGKLHASPSNGFWLIGCKEGKVYEAHTEQKEP-------RVLRVEG- 408

  Fly   676 ITTGSTIGVLLDLERHTLSF 695
              ....||:.|......:||
 Frog   409 --RPEKIGIYLSFSDGVVSF 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9-like_C-I 2..>35 CDD:438238
Bbox1_TRIM9-like_C-I 199..244 CDD:380861 13/53 (25%)
Bbox2_TRIM9-like 255..291 CDD:380822 13/35 (37%)
CC_brat-like 298..420 CDD:475168 27/151 (18%)
FN3 472..564 CDD:238020 6/91 (7%)
SPRY_PRY_TRIM67_9 561..735 CDD:293947 27/149 (18%)
trim72NP_001008188.1 RING-HC_TRIM72_C-IV 10..70 CDD:438274 19/73 (26%)
Bbox2_TRIM72_C-IV 86..127 CDD:380855 15/51 (29%)
SPRY_PRY_TRIM72 280..470 CDD:293976 42/271 (15%)
Blue background indicates that the domain is not in the aligned region.

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