DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trim9 and trim63b

DIOPT Version :10

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_957389.1 Gene:trim63b / 394070 ZFINID:ZDB-GENE-040426-1003 Length:348 Species:Danio rerio


Alignment Length:467 Identity:91/467 - (19%)
Similarity:159/467 - (34%) Gaps:163/467 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEDELRCPTCKQLYANP-VLLPCFHALCLGCALDIQTPYSPGSALPGAVNGAGAASAAGHNGLHG 64
            :|.:|.||.|..::..| |:|||.|.||.|||.|:.                             
Zfish    19 LEKQLSCPICLDMFTKPVVILPCQHNLCRGCASDLY----------------------------- 54

  Fly    65 NGGGAGGGAAAPVTNPNGPGTRHSSHSSAASTASSNTGSESVTSDQDQSDKVSIFSEADSGVVCC 129
                                                                             
Zfish    55 ----------------------------------------------------------------- 54

  Fly   130 SNTSRPVSYAGTGLLPGVGNVVAPPGAAYCLTCPLCRKLVFFDDGGVRNLPTYRAMEAIVDRFCA 194
             ::..|..::|     ||            ..||.||..|..|..||..|.....:|.|:|    
Zfish    55 -DSRNPYRFSG-----GV------------FRCPTCRFEVVLDRHGVHGLQRNLLVENIID---- 97

  Fly   195 REALRCQMCETDPKVASLICEQCEIRYCDACRELTHPARGPLAKHTLVKPRGAAQQRESVCGEHE 259
                              |.:|         ::......|.....:.:||:.:   :|.:|.|||
Zfish    98 ------------------IYKQ---------QQEGGGGGGGSTTESPIKPKSS---KELMCQEHE 132

  Fly   260 -ETLSQYCLSCKAPACGLCIGELRHQAHDVQSINVTCKAQKTELSHNLQQLSEKARSTTEFIQRL 323
             |.::.||::.:.|.|.:|....:|:..:|..:....:|||.|||:.:..|       .....||
Zfish   133 DEKINIYCVTHQTPTCSMCKVFGQHKDCEVSPLASVYQAQKGELSNAIDAL-------VAGNGRL 190

  Fly   324 KGMSDKVTESCMEFE------RLVHAQC-EALIQAIHDRREYLLEAIRMDKDTKIRILKDQQSNC 381
            :.:.:::.|:|...:      :....:| ::|..|:.:|:..|||.|..::|.|:..|:......
Zfish   191 QALLNQMEEACTAVQDNAQRAKQKFGECFDSLYAALEERKNALLERIGKEQDEKVGALRSLARRY 255

  Fly   382 TGKLQQTTGLIQFCIEALKETDSAAFLQVGSMLINRVTNTDMTWHQEVTNAAPRVSPIVDLTLDD 446
            ..:||..|.|....::||:::.:|.|||....||::..:...:...| ....|....:...|||.
Zfish   256 GDRLQAATELTDMAVQALEQSGAAEFLQASKNLISQTKDAAKSSLAE-ERPEPGFERMDHFTLDT 319

  Fly   447 AALARAIDNLNF 458
            ..:...:..::|
Zfish   320 EQVETLLSKMDF 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9-like_C-I 2..>35 CDD:438238 17/33 (52%)
Bbox1_TRIM9-like_C-I 199..244 CDD:380861 3/44 (7%)
Bbox2_TRIM9-like 255..291 CDD:380822 12/36 (33%)
CC_brat-like 298..420 CDD:475168 33/128 (26%)
FN3 472..564 CDD:238020
SPRY_PRY_TRIM67_9 561..735 CDD:293947
trim63bNP_957389.1 CC_brat-like 172..297 CDD:475168 33/131 (25%)
RING_Ubox 23..73 CDD:473075 22/161 (14%)
Bbox2_MuRF3_C-II 126..168 CDD:380891 12/41 (29%)
Blue background indicates that the domain is not in the aligned region.

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