DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trim9 and tn

DIOPT Version :10

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_001137707.1 Gene:tn / 37190 FlyBaseID:FBgn0265356 Length:1517 Species:Drosophila melanogaster


Alignment Length:634 Identity:118/634 - (18%)
Similarity:188/634 - (29%) Gaps:194/634 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 SPGSALPGAVNGAG-AASAAGHNGLHGNGG----GAGGGAAAPVTNPNGPGTRHSSHSSAASTAS 98
            |.|.|.....:|.| .||......|...||    |:...||:||.|.....||.....:.|:|..
  Fly   516 STGGAATSTSSGGGDTASDQRVAALKNRGGEESDGSSNQAASPVRNSAASTTRAEVSVNEANTEE 580

  Fly    99 SNTGSESVTSDQDQSDKVSIFSEADSGVVCCSNTSRPVSYAGTGLLPGVGNVVAPPGAAYCLTCP 163
            ....|||  ||.::.::|....|                                          
  Fly   581 EGVASES--SDSEEDEEVEDEDE------------------------------------------ 601

  Fly   164 LCRKLVFFDDGGVRNLPTYRAMEAIVDRFCAREALRCQMCETDPKVASLICEQCEIRYCDACREL 228
                                  |..||             |.:.:|...:.|:      :|.|||
  Fly   602 ----------------------EEEVD-------------EEEEQVEESVEEE------EAPREL 625

  Fly   229 THPARGPLAKHTLVKPRGAAQQRESVCGEHEETLSQYCLSCKAPACGLCIGELRHQAHDVQSINV 293
                        |..|..|.|...|...|.||:.|:|        ..:...|...:..:|:...:
  Fly   626 ------------LNLPEEALQPTSSEVTEEEESSSEY--------EEVTATESEEEQEEVEGRVI 670

  Fly   294 TCKAQ----------KTELSHNLQQLSEKARSTTEFI--QRLKGMSDKVTESCMEFERLVHAQCE 346
            ..::|          :.:::|.:::      |..:.|  |.|...:||.|:...|.|        
  Fly   671 EIESQDLPVINVLPPENDIAHKVEE------SPVDHISNQELMEETDKSTDESPEEE-------- 721

  Fly   347 ALIQAIHDRREYLLEAIRMDKDTKIRIL---KDQQSNCTGKLQQTTGLIQFCIEALKETDSAAFL 408
                   :..||..|.|........::.   |.|:|..:.....|.          ....|||..
  Fly   722 -------EEEEYTEEEIESKPPVSAQVAAVKKTQRSGSSDSSASTE----------SSASSAAAA 769

  Fly   409 QVGSMLINRVTNTDMTWHQEVTNAAPRVSPIVDLTLDDAALARAIDNLNFIQMRAVKDGDERCPA 473
            .|.:      |:|      ..|.|||..|.    :...:..|:|..:..:...|......|:   
  Fly   770 AVAA------TST------SATAAAPATSS----SNSTSQNAKAPSSSRYSTARDTTAVPEK--- 815

  Fly   474 APMTPTILP--SDCSAENNSVTVAWQPPNHSFVEGYVLELDDGSGGEFREVYCGKETICTVDGLH 536
            .|.....||  |..|..|.|........:.|..|....|.:..|..|.:.......:........
  Fly   816 KPFVSRFLPQHSTASTTNGSADKKKAESSSSSEEETSSESESESEPETKAKSSATSSTTNTKSTP 880

  Fly   537 FNSMYNARVKAFNSAGEGEYSELIGLQTAEVAWFTFDPVLSGGAGSGLIFSKNNATVSVEGWEHR 601
             ||..::...|.:|...|.|.:.:..:.|     :.|...|..||     ..:.||.|..|:   
  Fly   881 -NSAASSTTAASSSTTSGSYRDRLEARRA-----SRDDSSSTAAG-----RSSYATPSSSGY--- 931

  Fly   602 VALGSVGFSRGVHYWEFTIDNYTADTDPAFGVARIDVARNKMLGKDEKS 650
               ||...:.|.........::|::::..:|........::.|.|.:.|
  Fly   932 ---GSGSGTTGGRTRAVPAPHHTSESEDRYGSGTGSSYTSRFLNKSKSS 977

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9-like_C-I 2..>35 CDD:438238
Bbox1_TRIM9-like_C-I 199..244 CDD:380861 8/44 (18%)
Bbox2_TRIM9-like 255..291 CDD:380822 7/35 (20%)
CC_brat-like 298..420 CDD:475168 23/136 (17%)
FN3 472..564 CDD:238020 18/93 (19%)
SPRY_PRY_TRIM67_9 561..735 CDD:293947 17/90 (19%)
tnNP_001137707.1 RING-HC_NHL-1-like 3..55 CDD:438187
CC_brat-like 124..232 CDD:475168
NHL_TRIM71_like 1234..1517 CDD:271324
NHL repeat 1258..1297 CDD:271324
WD40 repeat 1261..1304 CDD:293791
NHL repeat 1305..1344 CDD:271324
WD40 repeat 1345..1377 CDD:293791
NHL repeat 1352..1388 CDD:271324
NHL repeat 1396..1436 CDD:271324
WD40 repeat 1402..1439 CDD:293791
NHL repeat 1445..1475 CDD:271324
WD40 repeat 1446..1485 CDD:293791
NHL repeat 1491..1517 CDD:271324
Blue background indicates that the domain is not in the aligned region.

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