DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trim9 and trim9

DIOPT Version :9

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:XP_005157040.1 Gene:trim9 / 336099 ZFINID:ZDB-GENE-030131-8043 Length:730 Species:Danio rerio


Alignment Length:789 Identity:324/789 - (41%)
Similarity:451/789 - (57%) Gaps:123/789 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEDELRCPTCKQLYANPVLLPCFHALCLGCALDI--QTPYSPGSALPGAVNGAGAASAAGHNGLH 63
            ||:||:||.|...:..|::|||.|.:||.||.:|  |||                          
Zfish     4 MEEELKCPVCGSFFREPIILPCSHNICLACARNILVQTP-------------------------- 42

  Fly    64 GNGGGAGGGAAAPVTNPNGPGTRHSSHSSAASTASSNTGSESVTSDQD--QSDKVSIFSEADSG- 125
                                         .|.:..|:..|.|..||.|  ..||:|::|||||| 
Zfish    43 -----------------------------DAESPQSSRASGSGVSDYDYLDLDKMSLYSEADSGY 78

  Fly   126 ----------VVCCSNTSR----------PVSYAGTGLLPGVGNVVAPPGAAYCLTCPLCRKLVF 170
                      ...|..:..          |...|...|||..| |:.|.....|||||.|.:.:.
Zfish    79 GSYGGFVSAPTTPCQKSPNGVRVFPPSMPPPQQAQHHLLPHTG-VLPPVPRNSCLTCPQCHRSLT 142

  Fly   171 FDDGGVRNLPTYRAMEAIVDRF--CAREALRCQMCETDPKVASLICEQCEIRYCDACRELTHPAR 233
            .||.|:|..|..|.:|.:|||:  ....||:||:||..|:.|:::||||::.|||.||...||.|
Zfish   143 LDDRGLRGFPKNRVLEGVVDRYQQSKAAALKCQLCEKSPREATVMCEQCDVFYCDPCRLRCHPPR 207

  Fly   234 GPLAKHTLVKP------RGAAQQRESVCGEHE-ETLSQYCLSCKAPACGLCIGELRHQAHDVQSI 291
            ||||||.||.|      |.|:.::.|.|.||| |.||.||:.||.|.|..|:.:.:|..|:|:::
Zfish   208 GPLAKHRLVPPAQGRISRRASPRKISTCTEHELENLSMYCVQCKTPVCYQCLEDGKHSTHEVKAL 272

  Fly   292 NVTCKAQKTELSHNLQQLSEKARSTTEFIQRLKGMSDKVTESCMEFERLVHAQCEALIQAIHDRR 356
            ....|..|.:||..|..||::|....||:.:|:.|...:.|:.:|||..:.|||:|||:|::.|:
Zfish   273 GAMWKLHKGQLSQALNVLSDRATEAKEFLVQLRNMVQHIQENGVEFEACLVAQCDALIEALNRRK 337

  Fly   357 EYLLEAIRMDKDTKIRILKDQQSNCTGKLQQTTGLIQFCIEALKETDSAAFLQVGSMLINRVTNT 421
            ..||..:..:.:.|:.:::||.|:||.||:|||||:::|:|.:||.|.:.|||:...||.||..|
Zfish   338 AQLLSRVTKEHEHKLSVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHMT 402

  Fly   422 DMTWHQEVTNAAPRVSPIVDLTLDDAALARAIDNLNFIQMRAVKDGDERCPAAPMTPTILPSDCS 486
            :..|.:  .:..||:|...|||||...|.:.|..|:|:||:.        ||||:   :...:|.
Zfish   403 ENQWGK--GSLTPRMSSDFDLTLDSGPLLQTIHQLDFVQMKV--------PAAPI---LQLEECC 454

  Fly   487 AENNSVTVAW-QPPNHSF-VEGYVLELDDGSGGEFREVYCGKETICTVDGLHFNSMYNARVKAFN 549
            .:.:|.|::| |||..:. |:||:||||||:||:|||||.|.|.|||||||||||.|.:||||||
Zfish   455 TQTSSATLSWKQPPLSTIAVDGYILELDDGTGGQFREVYVGTEMICTVDGLHFNSTYKSRVKAFN 519

  Fly   550 SAGEGEYSELIGLQTAE-------------VAWFTFDPVLSGGAGSGLIFSKNNATVSVEGWEHR 601
            |:|.|:||:.:.:||:|             |||||||   |..|...:|.|.:|.||:...::.|
Zfish   520 SSGVGQYSKTLVMQTSEMSLPSYGSQTLATVAWFTFD---SASAHPDIILSNDNLTVTCNSYDDR 581

  Fly   602 VALGSVGFSRGVHYWEFTIDNYTADTDPAFGVARIDVARNKMLGKDEKSFAMYIDRQRSWFQHNS 666
            |.:|:.||||||||||.|||.|....||||||||.||.::.|||||:|::|||:|..||||.||:
Zfish   582 VVMGNTGFSRGVHYWEMTIDRYDNHPDPAFGVARADVMKDVMLGKDDKAWAMYVDNNRSWFMHNN 646

  Fly   667 IHERRVEGGITTGSTIGVLLDLERHTLSFLVNEMPQGSVAFRDLYGVFYPAVSINRGVTLTMHTA 731
            .|..|.:|||:.|:|:|||||..|..|.||:|:..||.|||..|.|::|||:|:||.|.:|:|:.
Zfish   647 SHTNRTDGGISKGATVGVLLDFTRGILLFLINDEQQGPVAFNTLEGMYYPAISLNRNVQVTLHSG 711

  Fly   732 MDAPKMDYF 740
            :..|  |::
Zfish   712 LPIP--DFY 718

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9_like_C-I 2..37 CDD:319490 17/36 (47%)
zf-B_box 250..291 CDD:306989 18/41 (44%)
ClassIIa_HDAC_Gln-rich-N 298..420 CDD:330228 50/121 (41%)
FN3 472..564 CDD:238020 52/93 (56%)
SPRY_PRY_TRIM67_9 561..735 CDD:293947 93/186 (50%)
trim9XP_005157040.1 RING 10..46 CDD:302633 17/90 (19%)
BBOX 169..217 CDD:197662 27/47 (57%)
BBOX 235..272 CDD:197662 17/36 (47%)
BBC 279..405 CDD:128778 51/125 (41%)
FN3 443..534 CDD:238020 52/93 (56%)
SPRY_PRY_TRIM67_9 545..715 CDD:293947 90/172 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 134 1.000 Domainoid score I4973
eggNOG 1 0.900 - - E1_KOG4367
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H9045
Inparanoid 1 1.050 554 1.000 Inparanoid score I1089
OMA 1 1.010 - - QHG48085
OrthoDB 1 1.010 - - D239986at33208
OrthoFinder 1 1.000 - - FOG0003096
OrthoInspector 1 1.000 - - otm26131
orthoMCL 1 0.900 - - OOG6_105047
Panther 1 1.100 - - O PTHR24099
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2070
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.840

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