DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trim9 and Trim42

DIOPT Version :9

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_001013977.1 Gene:Trim42 / 301106 RGDID:1359699 Length:723 Species:Rattus norvegicus


Alignment Length:718 Identity:133/718 - (18%)
Similarity:223/718 - (31%) Gaps:259/718 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DELRCPTCKQLYANPVLLPCFHALCLGCALDIQTPYSPGSALPGAVNGAGAASAAGHNGLHGNGG 67
            :.|.||.|.:|..:..:|||.|:||..|...:|                                
  Rat   142 NHLTCPMCNRLRLHSFMLPCNHSLCEKCLRQLQ-------------------------------- 174

  Fly    68 GAGGGAAAPVTNPNGPGTRHSSHSSAASTASSNTGSESVTSDQDQSDKVSIFSEADSGVVCCSNT 132
                              :|:                .||.:                       
  Rat   175 ------------------KHA----------------EVTEN----------------------- 182

  Fly   133 SRPVSYAGTGLLPGVGNVVAPPGAAYCLTCPLCRKLVFFDDGGVRNLPTYRAMEAIVDRFCAREA 197
                                    .:.|.||:|.:..........:||.......:..|:..:..
  Rat   183 ------------------------FFILICPMCNRSHCMPYSHQMHLPENYLRGRLTKRYMQQHG 223

  Fly   198 ------------LRCQMCETDPKVASLICEQCEIRYCDACRELTHPARGPLAKHTLVKPRGAAQQ 250
                        :.||:|.| .::|...|..|.:..|:.|.:..| :...:..|..| ...|..|
  Rat   224 YLKWRFDRSSGPILCQVCRT-RRIAYKRCVTCRLNLCNDCLKAFH-SDVAMQDHVFV-DTSAEDQ 285

  Fly   251 RESVCGEHEET-LSQYCLSCKAPACGLCIGELRHQAHDVQSINVTCKAQKTELSHNLQQLSEKAR 314
            .|.:|..|..: :::||.|.....|..|.... |..||..|:...|              ||::.
  Rat   286 DEKICIHHPSSRINEYCRSDNQLLCAFCKIAF-HNGHDTVSLIDAC--------------SERSA 335

  Fly   315 STTEFIQRLKGMSDKVTESCMEFERL---VHAQCEALIQAIHDRREYL-LEAIRMDKDTKIRILK 375
            :....|.:.|.:..::....|||..|   ..|..||..:.:  |..:| |.||..:|:   :|:.
  Rat   336 ALFSAIAKFKAVRYEIDNDLMEFNILKSSFKADKEAKRKEV--RNGFLKLRAILQEKE---KIIM 395

  Fly   376 DQQSN---------------CTGKLQQTTGLIQFCIEALKETDSAAFLQVGSMLINRVTNTDMTW 425
            :|..|               .|.|:.:..|||.:..||||||...||||...:|::::       
  Rat   396 EQIENLEVSRQKEIEKYVYITTMKVNEMDGLIAYSKEALKETGQVAFLQSAKILVDQI------- 453

  Fly   426 HQEVTNA-AP----RVSPIVDLTLDDAALARAIDNLNFIQMRAVKDGDER-CPAAPMTPTILPSD 484
            .:.:.|. .|    |:..:..:.||.|.|:.||..|       ...|.:: |.:....|:..|  
  Rat   454 EEGIQNTFRPDPQLRLHSLHCIPLDFAELSSAIHEL-------FPTGPKKTCSSGDSLPSQYP-- 509

  Fly   485 CSAENNSVTVAWQP--PNHSFVEGYVLEL-----------DDGSGGEFREVYCGKETIC---TVD 533
               .::.:.:|.:.  ..|||....:.:.           |.|..|  .|.|...::..   |.|
  Rat   510 ---VHSEMMIARKVTFSTHSFGNQQIYQRSSSLISFNTANDKGKAG--LENYGRAQSAAPAKTTD 569

  Fly   534 GLH-----------------FNSMYNARVKAFNSAGE-GEYSELIGLQTAEVAWFTFDPVLSGGA 580
            ||:                 |::.|:....:..:.|. ..|..|:..:.|:|.|           
  Rat   570 GLYTYWSATGETQPPQSSNSFHNWYSFNDTSVRTPGPIVIYQTLVYPRAAKVYW----------- 623

  Fly   581 GSGLIFSKNNATVSVEGWE-----------HRVALGSVGFSRGVHYWEFTIDNYTADTDPAFGVA 634
                    ...|..|:.:|           :.|.....|..|.:......:.|.|.:|:..|.|.
  Rat   624 --------TCPTEDVDSFEMEFYELITTPPNNVRTELCGQIRDIMQQNLELHNLTPNTEYLFKVR 680

  Fly   635 RID 637
            .|:
  Rat   681 AIN 683

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9_like_C-I 2..37 CDD:319490 13/33 (39%)
zf-B_box 250..291 CDD:306989 12/41 (29%)
ClassIIa_HDAC_Gln-rich-N 298..420 CDD:330228 36/140 (26%)
FN3 472..564 CDD:238020 20/125 (16%)
SPRY_PRY_TRIM67_9 561..735 CDD:293947 15/88 (17%)
Trim42NP_001013977.1 RING-HC_TRIM42_C-III 143..193 CDD:319492 20/162 (12%)
Bbox_SF 235..280 CDD:412124 12/47 (26%)
Bbox_SF 287..326 CDD:412124 11/39 (28%)
Topo_C_assoc <341..432 CDD:421254 23/95 (24%)
FN3 612..698 CDD:238020 16/91 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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