DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trim9 and Trim38

DIOPT Version :10

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_001025106.1 Gene:Trim38 / 214158 MGIID:2684869 Length:471 Species:Mus musculus


Alignment Length:639 Identity:118/639 - (18%)
Similarity:196/639 - (30%) Gaps:233/639 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 VCCSNTSRPV------SYAGTGLLPGVGNVVAPPGAAYCLTCPLCRKLVFFDDGGVRNLPTYRAM 185
            :|.:..|.||      ||..:.:.....| |:|......|.||||.     ....:.||...:.:
Mouse    18 ICKAMMSHPVSINCGHSYCKSCIQSYYCN-VSPKTGWKMLGCPLCS-----SPFSLENLRPNKEL 76

  Fly   186 EAIVDRFCAREALRCQMCETDPKVASLICEQCEIRYCDACRELTHPARGPLAKHTLVKPRGAAQQ 250
            |.|:|.....|                                                   .|.
Mouse    77 ETIIDMIKGME---------------------------------------------------EQD 90

  Fly   251 RESVCGEHEETLSQYCLSCKAPACGLCIGELRHQAHDVQSINVTCKAQKTELSH---NLQQLSEK 312
            ::.||.||||..:::|.......|..|..|.||:.|.:..:....:..|.:|.:   .|::|.|.
Mouse    91 QDMVCEEHEEKFNRFCEDDGQLLCWRCYWEDRHKGHTLAHVKDVYQNYKEKLQNTMTKLRELQEN 155

  Fly   313 ARSTTEFIQRLKGMSDKVTESCMEFERLVHAQCEALIQAIHDRREYLLEAIRMDKDTKIRILKDQ 377
            ......||..                     |..|...|:.|||:               .:|..
Mouse   156 HEVQIHFITH---------------------QINAWKDAVEDRRQ---------------TIKSN 184

  Fly   378 QSNCTGKLQQTTGLIQFCIEALKETDSAAFLQVGSMLINRVTNTDMTWHQEVTNAAPRVSPIVDL 442
            ..|....||:..   :|.:..|:..:....:|        :..::....|....|..::..:   
Mouse   185 FKNLQSFLQEEE---KFYLWRLENEEKEMLVQ--------LEGSEANLQQTFERAQCQIQEL--- 235

  Fly   443 TLDDAALARAIDNLNFIQMRAVKDGDERCPAAPMTPTILPSDCSAENNSVTVAWQPPNHSFVEGY 507
               :|....:...|    ::.||:...||.|....|  |.:|                       
Mouse   236 ---EAKCQGSAQKL----LQDVKNTLSRCEAMKRNP--LKAD----------------------- 268

  Fly   508 VLELDDGSGGEFREVYCGKETICTVDGLHFNSMYNARVKAFNSAGEGEYSELIGLQTAEVAWFTF 572
            .|::               .|.|.|..|:|:      ||..  ....:.|.::...||.:     
Mouse   269 PLKV---------------HTKCNVSELYFD------VKTI--LRRHQVSVILDPSTAHL----- 305

  Fly   573 DPVLSGGAGSGLIFSKNNATVSVEGWEHR-----VALGSVGFSRGVHYWEFTIDNYTA-DTDPAF 631
            |..|:.| |..:.:.:....:.......|     ..||..||:.|.:|:|.:::|.|: |    .
Mouse   306 DLALTKG-GRLVTYKRCPRDLQARSSAKRFYGLPCVLGCEGFTSGRYYFEVSVENATSWD----L 365

  Fly   632 GVARIDVARNKMLGKD-EKSFAMYIDRQRSWFQHNSIHERRVEG--GITTGST-----------I 682
            ||...:|.|...:.|: |..|         |    :|.....:|  .:|:..|           :
Mouse   366 GVCVENVHRGFNMKKEPESGF---------W----TIKMSEEDGLEALTSTPTPPLHLIEKPQIL 417

  Fly   683 GVLLDLERHTLSFL-------VNEMPQGSVAFRDLYGVFY----------PAVS 719
            ||.||.|...:||.       :...|:.|  |:|....|:          ||::
Mouse   418 GVFLDYEAGAVSFYSVTTGSHIFTFPKAS--FQDTLRPFFQVYQYSPLFLPAIN 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9-like_C-I 2..>35 CDD:438238
Bbox1_TRIM9-like_C-I 199..244 CDD:380861 0/44 (0%)
Bbox2_TRIM9-like 255..291 CDD:380822 12/35 (34%)
CC_brat-like 298..420 CDD:475168 20/124 (16%)
FN3 472..564 CDD:238020 13/91 (14%)
SPRY_PRY_TRIM67_9 561..735 CDD:293947 43/196 (22%)
Trim38NP_001025106.1 RING_Ubox 9..65 CDD:473075 14/52 (27%)
Bbox_SF 93..127 CDD:469587 12/33 (36%)
SMC_prok_B 138..>262 CDD:274008 29/180 (16%)
SPRY_PRY_TRIM38 282..466 CDD:293987 45/216 (21%)
Blue background indicates that the domain is not in the aligned region.

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