DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trim9 and Mid1

DIOPT Version :9

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:XP_017173902.1 Gene:Mid1 / 17318 MGIID:1100537 Length:706 Species:Mus musculus


Alignment Length:853 Identity:198/853 - (23%)
Similarity:299/853 - (35%) Gaps:299/853 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEDELRCPTCKQLYANPVLLPCFHALCLGCALDIQTPYSPGSALPGAVNGAGAASAAGHNGLHGN 65
            :|.||.||.|.:|:.:|:||||.|:||..||                                  
Mouse     4 LESELTCPICLELFEDPLLLPCAHSLCFNCA---------------------------------- 34

  Fly    66 GGGAGGGAAAPVTNPNGPGTRHSSHSSAASTASSNTGSESVTSDQDQSDKVSIFSEADSGVVCCS 130
                                    |....|..::|...||:.:.|                    
Mouse    35 ------------------------HRILVSHCATNEPVESINAFQ-------------------- 55

  Fly   131 NTSRPVSYAGTGLLPGVGNVVAPPGAAYCLTCPLCRKLVFFDDGGVRNLPTYRAMEAIVDRF--- 192
                                           ||.||.::.....|:..|.....::.|:|||   
Mouse    56 -------------------------------CPTCRHVITLSQRGLDGLKRNVTLQNIIDRFQKA 89

  Fly   193 ----------------------CAREALRCQMCETDP-KVASLICEQCEIRYCDACRELTHPARG 234
                                  .:.|.:.||.|:.|| :.|...|..||:.|||.|.:.|||.:.
Mouse    90 SVSGPNSPSETRRERAFDANTMSSAEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKK 154

  Fly   235 PLAKHTLVKPRGAAQQRESVCGEHE-ETLSQYCLSCKAPACGLC--IGELRHQAHDVQSINVTCK 296
            |...|.|::|...:..|..:|.||| |.::.||::.....|.||  :|  ||:.|.|.:::....
Mouse   155 PFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVG--RHRDHQVAALSERYD 217

  Fly   297 AQKTELSHNLQQLSEKARSTTEFIQRLKGMSDKVTESCMEFERLVHA---------QCEALIQAI 352
            ..|..|..||..|.::   .||    |:.:..|:.::|...|  |:|         :|:.||:.|
Mouse   218 KLKQNLESNLTNLIKR---NTE----LETLLAKLIQTCQHVE--VNASRQEAKLTEECDLLIEII 273

  Fly   353 HDRREYLLEAIRMDKDTKIRILKDQQSNCTGKLQQTTGLIQFCIEALKETDSAAFLQVGSMLINR 417
            ..||:.:...|:..|..::|.|..|.:||...|:::..||.....:|||.|.|.|||....:..|
Mouse   274 QQRRQIIGTKIKEGKVIRLRKLAQQIANCKQCLERSASLISQAEHSLKENDHARFLQTAKNITER 338

  Fly   418 VTNTDMTWHQEVTNAAPRVSPIVDL--TLDDAAL-----ARAIDNLNFIQMRAVKDGDERCPAAP 475
            |:        ..|.::..:.|.::|  |.|..||     .:.::.|:::             .||
Mouse   339 VS--------MATASSQVLIPEINLNDTFDTFALDFSREKKLLECLDYL-------------TAP 382

  Fly   476 MTPTILPSDCSAENNSVTVAWQPPNHSFVEGYVLELDDGSG-----GEF---------------- 519
            ..|.|....|:|..:::||.|...:...|..|.|:....:|     .|:                
Mouse   383 NPPAIREELCTASYDTITVHWTSEDEFSVVSYELQYTIFTGQANVVSEYLSADSLPPLRFPMFNV 447

  Fly   520 ------REVYC------GKETIC-----------------TVDGLHFNSMYNARVKAFNSAGEGE 555
                  .:|.|      |...:|                 ||.||...:.|...|||.|.|| ..
Mouse   448 QIICHSADVACDGTCLLGSAGLCNSADSWMIVPNIKQNHYTVHGLQSGTKYIFTVKAINQAG-SR 511

  Fly   556 YSELIGLQTAEVAWFTFDPVLSGGAGSGLIFSKNNATVSVE--------------GWEHRVALGS 606
            .||...|:|.... |..||   ..|...|..|.:|.||..:              |.......|:
Mouse   512 SSEPGKLKTNSQP-FRLDP---KSAHRKLKVSHDNLTVERDESSSKKSHAPERFAGQGSYGVAGN 572

  Fly   607 VGFSRGVHYWEFTIDNYTADTDPAFGVARIDVARNKMLGKDEKSFAMYIDRQRSWFQHN------ 665
            |....|.||||...   :..|..|.|:|.....:::.:||:..|:|:.........:|:      
Mouse   573 VFIDSGRHYWEVVT---SGSTWYAIGLAYRSAPKHEWIGKNAASWALCRCHNHWAVRHDGKETPI 634

  Fly   666 --SIHERRVEGGITTGSTIGVLLDLERHTLSFLVNEMPQGSVAFRDLYGVFYPAVSINRGVTL-T 727
              :.|.|||          |||||.:            .||:|       ||.|:|   .|.| |
Mouse   635 APAPHLRRV----------GVLLDYD------------NGSIA-------FYDALS---SVHLHT 667

  Fly   728 MHTAMDAP 735
            .|.|:..|
Mouse   668 FHAALAQP 675

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9_like_C-I 2..37 CDD:319490 17/34 (50%)
zf-B_box 250..291 CDD:306989 16/43 (37%)
ClassIIa_HDAC_Gln-rich-N 298..420 CDD:330228 39/130 (30%)
FN3 472..564 CDD:238020 32/141 (23%)
SPRY_PRY_TRIM67_9 561..735 CDD:293947 49/196 (25%)
Mid1XP_017173902.1 RING_Ubox 8..61 CDD:388418 24/161 (15%)
RING-HC finger (C3HC4-type) 10..59 CDD:319361 22/157 (14%)
Bbox1_MID1_C-I 115..164 CDD:380894 20/48 (42%)
Bbox2_MID1_C-I 168..214 CDD:380880 16/47 (34%)
BBC 219..344 CDD:128778 39/141 (28%)
COS 323..374 CDD:375994 14/58 (24%)
FN3 <472..520 CDD:238020 14/48 (29%)
SPRY 524..700 CDD:383051 48/191 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24099
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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