DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trim9 and Trim63

DIOPT Version :10

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:XP_038965120.1 Gene:Trim63 / 140939 RGDID:619964 Length:354 Species:Rattus norvegicus


Alignment Length:471 Identity:98/471 - (20%)
Similarity:150/471 - (31%) Gaps:181/471 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEDELRCPTCKQLYANP-VLLPCFHALCLGCALDIQTPYSPGSALPGAVNGAGAASAAGHNGLHG 64
            :|.:|.||.|.:::..| |:|||.|.||..||.||..     :|.|...|..|:.|.:|..    
  Rat    17 LEKQLICPICLEMFTKPVVILPCQHNLCRKCANDIFQ-----AANPYWTNRGGSVSMSGGR---- 72

  Fly    65 NGGGAGGGAAAPVTNPNGPGTRHSSHSSAASTASSNTGSESVTSDQDQSDKVSIFSEADSGVVCC 129
                                                                             
  Rat    73 ----------------------------------------------------------------- 72

  Fly   130 SNTSRPVSYAGTGLLPGVGNVVAPPGAAYCLTCPLCRKLVFFDDGGVRNLPTYRAMEAIVDRFCA 194
                                          ..||.||..|..|..||..|.....:|.|:|    
  Rat    73 ------------------------------FRCPSCRHEVIMDRHGVYGLQRNLLVENIID---- 103

  Fly   195 REALRCQMCETDPKVASLICEQCEIRYCDACRELTHPARGPLAKHTLVKPRGAAQQRESVCGEHE 259
               :..|.|.:.|                 .::.:||                      :|.|||
  Rat   104 ---IYKQECSSRP-----------------LQKGSHP----------------------MCKEHE 126

  Fly   260 -ETLSQYCLSCKAPACGLCIGELRHQAHDVQSINVTCKAQKTELSH--------------NLQQL 309
             |.::.|||:|:.|.|.||.....|||.:|..:....:.||||||:              .:.||
  Rat   127 DEKINIYCLTCEVPTCSLCKVFGAHQACEVAPLQSIFQGQKTELSNCISMLVAGNDRVQTIISQL 191

  Fly   310 SEKARSTTEFIQRLKGMSDKVTESCMEFERLVHAQCEALIQAIHDRREYLLEAIRMDKDTKIRIL 374
            .:..|.|.|...::|             |.|.| :.:||...:.:::..||:.|..:::.|:..:
  Rat   192 EDSCRVTKENSHQVK-------------EELSH-KFDALYAILDEKKSELLQRITQEQEEKLDFI 242

  Fly   375 KDQQSNCTGKLQQTTGLIQFCIEALKETDSAAFLQVGSMLINRVTNTDMTWHQEVTNAAPRVSPI 439
            :........:|:::|.|::..|::|.|...|.||.....||..:...........|.........
  Rat   243 EALILQYREQLEKSTKLVETAIQSLDEPGGATFLLSAKPLIKSIVEASKGCQLGKTEQGFENMDY 307

  Fly   440 VDLTLDDAALA-RAID 454
            ..|.|:..|.| ||||
  Rat   308 FTLNLEHIAEALRAID 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9-like_C-I 2..>35 CDD:438238 16/33 (48%)
Bbox1_TRIM9-like_C-I 199..244 CDD:380861 5/44 (11%)
Bbox2_TRIM9-like 255..291 CDD:380822 17/36 (47%)
CC_brat-like 298..420 CDD:475168 32/135 (24%)
FN3 472..564 CDD:238020
SPRY_PRY_TRIM67_9 561..735 CDD:293947
Trim63XP_038965120.1 RING-HC_MuRF1 18..80 CDD:319673 26/165 (16%)
Bbox2_MuRF1_C-II 118..160 CDD:380889 19/63 (30%)
CC_brat-like 166..283 CDD:475168 30/130 (23%)
Blue background indicates that the domain is not in the aligned region.

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