DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trim9 and LOC105947078

DIOPT Version :10

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:XP_031749186.1 Gene:LOC105947078 / 105947078 XenbaseID:XB-GENE-29089443 Length:1098 Species:Xenopus tropicalis


Alignment Length:574 Identity:115/574 - (20%)
Similarity:177/574 - (30%) Gaps:217/574 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEDELRCPTCKQLYANPVLLPCFHALCLGCALDIQTPYSPGSALPGAVNGAGAASAAGHNGLHGN 65
            :.|||.|..|..:|.:||:|||.|..|.||.         |..|                   |.
 Frog    15 LRDELSCSICLSIYTDPVMLPCGHNFCRGCI---------GRVL-------------------GT 51

  Fly    66 GGGAGGGAAAPVTNPNGPGTRHSSHSSAASTASSNTGSESVTSDQDQSDKVSIFSEADSGVVCCS 130
            ..|:||                                                           
 Frog    52 QEGSGG----------------------------------------------------------- 57

  Fly   131 NTSRPVSYAGTGLLPGVGNVVAPPGAAYCLTCPLCRKLVFFDDGGVRN---LPTYRAMEAIVDRF 192
                                         .:||.||       ...|.   ||..|.:..|.:||
 Frog    58 -----------------------------YSCPECR-------AEYRERPALPRNRTLGNIAERF 86

  Fly   193 CARE------ALRCQMCETDPKVASLICEQCEIRYCDACRELTH-PARGPLAKHTLVKPRGAAQQ 250
            .:.:      .:.|..|:: |..|...|||||...||     || .......:|.|.:|..:..:
 Frog    87 LSAQPEPGETGILCTYCDS-PVAAVKSCEQCETSLCD-----THLHKHNKSVRHVLTEPTNSFME 145

  Fly   251 RESVCGEHEETLSQYCLSCKAPACGLCIGELRHQAHDVQSINVTCKAQKTELSHNLQQLSEKARS 315
            ::  |..|.:.|..||....|..|..|.....|:.|.|:.::...:.:|.:|...|::||.:...
 Frog   146 KK--CSTHRKILEYYCPEDSACVCVSCCLAGGHRGHRVELLSEASEKKKEKLRKVLEKLSPEREE 208

  Fly   316 TTEFIQRLK-----------GMSDKVTESCMEFERLVHAQCEALIQAIHDRRE----YLLEAIRM 365
            |....|||:           |.:::||....:....:.|..:.|:..|..::|    .|.|.|: 
 Frog   209 TERGAQRLQERRRDVAERAAGETERVTALFRDIREELEALEKRLLSNISRKKEKLSLQLTELIQ- 272

  Fly   366 DKDTKIRILKDQQSNCTGKLQQTTGLIQFC-----IEALKETDSA--------------AFLQVG 411
                ::.|.||:.|   ||::....|....     ::...|:|.|              ||..:.
 Frog   273 ----QLEIKKDELS---GKIRHIEELCNMAAPLTVLQEQLESDGAADTEGRETEGIKIPAFGNLN 330

  Fly   412 SMLINRVTNTDMT----------WHQEVTNAAPRVSPIVDLTLDDAALARAIDNLNFIQMRAVKD 466
            ..||:....|.:.          :.||.|          ||.||   :..|.|.:...:.|....
 Frog   331 KGLISETLLTGLAGIVTGIKGRIYGQEAT----------DLVLD---INTASDYVALSEDRKTAS 382

  Fly   467 GDERCPAAPMTPTILPSDCSAENNSVTVAWQPPNHSFVEG-YVLELDDGSGGEF 519
            |.|.....|.||          ...:..|....:.||..| :..|::....||:
 Frog   383 GSETALCYPHTP----------ERFIEYAQVLSSRSFPSGRHYWEVEGSESGEW 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9-like_C-I 2..>35 CDD:438238 15/32 (47%)
Bbox1_TRIM9-like_C-I 199..244 CDD:380861 15/45 (33%)
Bbox2_TRIM9-like 255..291 CDD:380822 11/35 (31%)
CC_brat-like 298..420 CDD:475168 33/155 (21%)
FN3 472..564 CDD:238020 10/49 (20%)
SPRY_PRY_TRIM67_9 561..735 CDD:293947
LOC105947078XP_031749186.1 RING-HC_TRIM25_C-IV 14..85 CDD:438259 30/192 (16%)
Bbox_SF 99..139 CDD:469587 15/45 (33%)
Bbox2_TRIM16-like 146..192 CDD:380827 11/47 (23%)
CC_brat-like 191..304 CDD:475168 26/120 (22%)
SPRY_PRY_C-I_2 361..527 CDD:293949 18/79 (23%)
RING_Ubox 584..655 CDD:473075
Bbox_SF 669..709 CDD:469587
Bbox2_TRIM16-like 716..762 CDD:380827
BBC 761..874 CDD:128778
SPRY_PRY_C-I_2 931..1097 CDD:293949
Blue background indicates that the domain is not in the aligned region.

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