DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trim9 and Trim30c

DIOPT Version :10

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:XP_006229977.1 Gene:Trim30c / 102554102 RGDID:1566132 Length:514 Species:Rattus norvegicus


Alignment Length:608 Identity:112/608 - (18%)
Similarity:195/608 - (32%) Gaps:186/608 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 LTCPLCRKLVFFDDGGVRNLPTYRAMEAIVDRFCAREALRCQMCETDPKVASL-------ICEQC 217
            :|||||.:|                ::..|...|....  |:.|.| |...|.       .|..|
  Rat    13 VTCPLCLEL----------------LKEPVSADCNHSF--CRACIT-PNYESNRNTEGQGSCPVC 58

  Fly   218 EIRYC-------DACRELTHPARGPLAKHTLVKPRGAAQQRESVCGEHEETLSQYCLSCKAPACG 275
            .:||.       ....::....:|       .|.....:|:.:||.:|.|.|..:|.......|.
  Rat    59 RVRYLFRNLRPNQHVAKIVESLKG-------FKSIPEKEQKVNVCAQHGEKLQLFCTKEMRAICW 116

  Fly   276 LCIGELRHQAHDVQSINVTCKAQKTELSHNLQQLSEKARSTTEF---IQRLKGMSDKVTESCMEF 337
            :|.....|:.|....|.......|.:|...||:|.||.::..|:   :|:.:...:...:|.:|:
  Rat   117 VCERSQDHRGHQTALIEELDHEYKRKLQDALQKLMEKEKTCDEWQENVQQQRTYWETQIQSDVEY 181

  Fly   338 ERLVHAQCEALIQAIHDRREYLLEAIRMDKDTKIRILKDQQSNCTGKLQQTTGLIQFCIEALKET 402
               :..:.:.|.:.:..:....|:.::.:|:..::.|:..::....:.|:...||.:....||.:
  Rat   182 ---IQKEFKLLRELLDSKENEKLQELKKEKEDVVKRLERSENELVQRRQRVRDLISYMQHQLKFS 243

  Fly   403 DSAAFLQVGSMLINRVTNTDMTWHQEVTNAAPRVSPIVDLTLDDAALARAIDNLNFIQMRAVKDG 467
            .......|.|:|            :....|..|.||||           ....|...|.:.:...
  Rat   244 TMDMQQDVNSLL------------RSYVKAIERNSPIV-----------RSQTLKLKQPQTIPKR 285

  Fly   468 DERCPAAPMTPTILPS--------------DCSAENNSVTVAWQPPNHSFVEGYVLELDDGSGGE 518
            ..|...|.....:|.:              :..|.|::|...                    ..|
  Rat   286 RRRMFQAQDMKGMLQAYLGLMDLRRYWVHMNLHANNHAVIAV--------------------NKE 330

  Fly   519 FREVYCGKETICTVDGLHFNSMYNARVKAFNSAGEGEYSELIGLQTAEVAWFTFDPVLSGGAGSG 583
            .|::   :.|......|..:.:||..|..:.:...|::...:.: :.:.||..       |...|
  Rat   331 KRQI---QHTSYYKRNLQISEIYNLSVLGYPAIHSGKHYWEVDV-SRKNAWLL-------GVNDG 384

  Fly   584 LI------------FS-KNNATVSVEGWEHRVALGSVGFSRGVHYWEFTIDNYTADTDPAFGVAR 635
            |.            || |.|:.|...|          .:.....||...:.|.:| :|..|    
  Rat   385 LCAQPQLHSITEMSFSAKYNSCVEQHG----------NYQPKYGYWVIGMKNRSA-SDECF---- 434

  Fly   636 IDVARNKMLGKDEKSFAMYIDRQRSWFQHNSIHERRVEGGITTGS------TIGVLLDLERHTLS 694
                                      ..|||        .::|.|      .:||.||.|..|||
  Rat   435 --------------------------VSHNS--------SVSTLSLPCPPTRVGVFLDREACTLS 465

  Fly   695 FL-VNEMPQGSVAFRDLYGVFYP 716
            |. |:..  |.:.:| .:..|:|
  Rat   466 FYDVSNF--GGLIYR-FHNPFFP 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9-like_C-I 2..>35 CDD:438238
Bbox1_TRIM9-like_C-I 199..244 CDD:380861 10/58 (17%)
Bbox2_TRIM9-like 255..291 CDD:380822 9/35 (26%)
CC_brat-like 298..420 CDD:475168 23/124 (19%)
FN3 472..564 CDD:238020 13/105 (12%)
SPRY_PRY_TRIM67_9 561..735 CDD:293947 36/176 (20%)
Trim30cXP_006229977.1 RING-HC_TRIM5-like_C-IV 7..78 CDD:438253 17/83 (20%)
Bbox2_TRIM5-like 95..133 CDD:380819 10/37 (27%)
COG4913 <129..>232 CDD:443941 17/105 (16%)
SPRY 304..504 CDD:470632 47/265 (18%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.