DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trim9 and si:ch1073-398f15.1

DIOPT Version :10

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:XP_005170298.1 Gene:si:ch1073-398f15.1 / 101884664 ZFINID:ZDB-GENE-141212-388 Length:647 Species:Danio rerio


Alignment Length:139 Identity:33/139 - (23%)
Similarity:52/139 - (37%) Gaps:27/139 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   365 MDKDTKIRILKDQQSNCTGKLQQTTGLIQFCIEALKETDSAAFLQVGS-MLINRVTNTDMTWHQE 428
            ||:..|.|..:..:|      ::.....|..:|.|.|.|..|.::|.. .|...........||:
Zfish   104 MDEALKTRRTRRNRS------EKAKSAPQVSLEVLAEADRPAMVEVSKPNLTEEPEEHRAETHQQ 162

  Fly   429 VTNAAPRVSPIVDL-------TLDDAALARAIDNLNFIQ-MRAVK-------DGD-----ERCPA 473
            :.:.....|.|:::       |:|:.......|.|.::| ..|||       .||     |..||
Zfish   163 IFSLVSEGSEILNIIAPAGVSTVDEEESGGLEDQLYYLQETPAVKPTETLEESGDLQEQPEERPA 227

  Fly   474 APMTPTILP 482
            .|..|..:|
Zfish   228 LPEPPVPVP 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9-like_C-I 2..>35 CDD:438238
Bbox1_TRIM9-like_C-I 199..244 CDD:380861
Bbox2_TRIM9-like 255..291 CDD:380822
CC_brat-like 298..420 CDD:475168 13/55 (24%)
FN3 472..564 CDD:238020 5/11 (45%)
SPRY_PRY_TRIM67_9 561..735 CDD:293947
si:ch1073-398f15.1XP_005170298.1 None
Blue background indicates that the domain is not in the aligned region.

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