DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trim9 and trim28

DIOPT Version :10

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:XP_002937648.1 Gene:trim28 / 100489687 XenbaseID:XB-GENE-1005536 Length:762 Species:Xenopus tropicalis


Alignment Length:467 Identity:98/467 - (20%)
Similarity:156/467 - (33%) Gaps:178/467 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CPTC-KQLYAN--PVLLPCFHALCLGCALDIQTPYSPGSALPGAVNGAGAASAAGHNGLHGNGGG 68
            |..| |||.|:  |.||||.|::|..| |..:||                               
 Frog    34 CGVCKKQLRADTEPQLLPCLHSVCRAC-LPPETP------------------------------- 66

  Fly    69 AGGGAAAPVTNPNGPGTRHSSHSSAASTASSNTGSESVTSDQDQSDKVSIFSEADSGVVCCSNTS 133
                                     |...::|:|                  :..|.||      
 Frog    67 -------------------------APEVATNSG------------------DLASAVV------ 82

  Fly   134 RPVSYAGTGLLPGVGNVVAPPGAAYCLTCPLCRKLVFFDDGGVRNL-----PTYRAMEAIVDRFC 193
                                       .||:|:...|..| .|.|.     ||...:...:.   
 Frog    83 ---------------------------NCPICKHQCFQKD-IVENYFLKVEPTSEPVTETIQ--- 116

  Fly   194 AREALRCQMCETDPKVASLICEQCEIRYCDACRELTHPARGPLAKHTLVKPRGAAQ---QRESVC 255
                 ||..|: |..||:..|.:|....|:.|.| .| .|....|...:|.:.:::   :|...|
 Frog   117 -----RCTSCD-DNTVANSYCVECTEWLCETCVE-AH-QRVKYTKDHTIKVKSSSKKETERAVYC 173

  Fly   256 GEHE-ETLSQYCLSCKAPACGLCIGELR-HQAHDVQSINVTCKAQKTELSHNLQQLSEK----AR 314
            ..|: |.|..||.||....|..|  :|: |:.|..|.:....|.|:..||..:::|.:|    .:
 Frog   174 PLHKNEPLMLYCESCDTLTCRDC--QLQGHKDHQYQFLEDAVKNQRKVLSALVKRLGDKHTALQK 236

  Fly   315 STTEFIQRLKGMSDKVTESCMEFERLVHAQCEALIQAIHDRREYLLEAIRMDKDTKIRILKDQQS 379
            ||.:....::.:||..       :||   |.:..:..:|..:|       ::|..|: ::.|.|.
 Frog   237 STKDVRTSIRQVSDLQ-------KRL---QVDVKMAILHIMKE-------LNKRGKL-LVNDMQK 283

  Fly   380 NCTG-------------KLQQ-TTGLIQFCIEALKETDSAAFLQVGSMLINRVTNTDMTWHQEVT 430
            ...|             |||: ...:::|...|| |:|:...|.:...||:      ...|:.:.
 Frog   284 VTEGHQDKLEKQHWAMNKLQKHQEHILRFATWAL-ESDNNIALLLSKKLIH------FQLHRALK 341

  Fly   431 NAAPRVSPIVDL 442
            .....|.|:.||
 Frog   342 VIVDPVEPLGDL 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9-like_C-I 2..>35 CDD:438238 15/30 (50%)
Bbox1_TRIM9-like_C-I 199..244 CDD:380861 14/44 (32%)
Bbox2_TRIM9-like 255..291 CDD:380822 14/37 (38%)
CC_brat-like 298..420 CDD:475168 30/139 (22%)
FN3 472..564 CDD:238020
SPRY_PRY_TRIM67_9 561..735 CDD:293947
trim28XP_002937648.1 RING-HC_TIF1beta 31..91 CDD:438421 26/164 (16%)
Bbox_SF 113..164 CDD:469587 15/61 (25%)
Bbox2_TIF1b_C-VI 170..213 CDD:380887 14/44 (32%)
CC_brat-like 216..341 CDD:475168 31/149 (21%)
PHD_TIF1beta 552..594 CDD:277093
Bromodomain 618..719 CDD:445827
Blue background indicates that the domain is not in the aligned region.

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