DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trim9 and trim69

DIOPT Version :10

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:XP_002937994.2 Gene:trim69 / 100487155 XenbaseID:XB-GENE-6462279 Length:644 Species:Xenopus tropicalis


Alignment Length:545 Identity:110/545 - (20%)
Similarity:189/545 - (34%) Gaps:164/545 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 EALRCQMCE---TDPKVASLICEQCEIRYCDACRELTHPARGPLA-----------KHT------ 240
            |.|.|::|.   .||     :..:|...:|.||.|.....|...:           |:|      
 Frog   176 EELTCRLCVELFKDP-----VMVECGHNFCKACIEKAWAGRDSFSCPECKEVINDKKYTINRALA 235

  Fly   241 -LVKPRGAA-----QQRESV---CGEHEETLSQYCLSCKAPACGLCIGELRHQAHDVQSINVTCK 296
             |||...||     :::|..   |.||:|.|..||.......|.:|...|:|.:|:...|.....
 Frog   236 NLVKKTAAAPVISIEKKEKPLENCAEHDERLKLYCKDDGTLGCIICRDSLKHASHNFLPILDAVA 300

  Fly   297 AQKTELSHNLQQLSEKARSTTEFIQRLKGMSDKVTE---SCMEFERLVHAQCEALIQAIHDRREY 358
            ..:.:|:..:..|....:.:.:.:.:   .::|:.:   :..|::..:.|:.|.:.:.:.:|.:.
 Frog   301 VYREQLAAIVAPLEASLKVSEQVVGQ---QNEKIVQHKNNICEYKDHIAAEFERMHEFLDEREKA 362

  Fly   359 LLEAIRMDKDTKIRILKDQQSNCTGKLQQTTGLIQFCIEALK----ETDSAAFLQVGSMLINRVT 419
            |||.::...|   .:||:.:.|.. |:|:....|:..|...|    ||||.:||......|::. 
 Frog   363 LLEQLQQQGD---GLLKEMEQNMV-KMQENIDGIKKTIAVAKDRVDETDSISFLTDIKAFIDKC- 422

  Fly   420 NTDMTWHQEVTNAAPRVSPIVDLTLDDAALARAI--DNLNFIQMRAVKDGDERCPAAPMTPTILP 482
               :...:||.:::..       ||....|.:..  ..:.||..:.:|..     ..|...|:|.
 Frog   423 ---LEQQREVVSSSGN-------TLLSKELCQGTFKGPIQFILWKEMKKS-----IVPNLSTMLL 472

  Fly   483 SDCSAENNSVTVAWQPPNHSFVEGYVLELDDGSGGEFREVYCGKETICTVDGLHFNSMYNARVKA 547
            ...:|..|                  |.|.||    ...|..|...:...|        |.:   
 Frog   473 DPSTAHPN------------------LILSDG----LTSVKYGDSKLSVPD--------NPK--- 504

  Fly   548 FNSAGEGEYSELIGLQTAEVAWFTFDPVLSGGAGSGLIFSKNNATVSVEGWEHRVALGSVGFSRG 612
                   .:|:.|                                         :.|||.||..|
 Frog   505 -------RFSQCI-----------------------------------------LVLGSEGFDSG 521

  Fly   613 VHYWEFTIDNYTA-DTDPAFGVARIDVARNKMLGKDEKSFAMYIDRQRSWFQHNSIHERRVEGGI 676
            .||||..:.:.|| |.    |:|.....|...:..:.|:....|     |.::.:.: :.:|...
 Frog   522 RHYWEVDVGDKTAWDV----GMASESSNRKGKIKLNPKNGYWAI-----WLRNGNAY-KALESPS 576

  Fly   677 TT------GSTIGVLLDLERHTLSF 695
            .|      ...|||.:|.|...:||
 Frog   577 KTLVLASKPRRIGVYVDYEGGMISF 601

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9-like_C-I 2..>35 CDD:438238
Bbox1_TRIM9-like_C-I 199..244 CDD:380861 14/65 (22%)
Bbox2_TRIM9-like 255..291 CDD:380822 12/35 (34%)
CC_brat-like 298..420 CDD:475168 26/128 (20%)
FN3 472..564 CDD:238020 15/91 (16%)
SPRY_PRY_TRIM67_9 561..735 CDD:293947 28/142 (20%)
trim69XP_002937994.2 PLN00104 20..>150 CDD:215056
CD_CSD 52..>107 CDD:475127
RING_Ubox 173..232 CDD:473075 14/60 (23%)
Bbox2_xNF7-like 257..295 CDD:380858 12/37 (32%)
CC_brat-like 305..422 CDD:475168 26/123 (21%)
SPRY_PRY_C-I_1 472..641 CDD:293968 40/221 (18%)
Blue background indicates that the domain is not in the aligned region.

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