DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trim9 and trim105

DIOPT Version :10

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_001124134.1 Gene:trim105 / 100170828 ZFINID:ZDB-GENE-060810-140 Length:426 Species:Danio rerio


Alignment Length:535 Identity:93/535 - (17%)
Similarity:162/535 - (30%) Gaps:199/535 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   195 REALRCQMC---ETDPKVASLI---CEQCEIRYCDACRELTHPARGPLAKHTLVKPRGAAQQRES 253
            ||.|.|.:|   ..:|.:...:   |.:|.:.|..:.|.   |...|..:               
Zfish    11 REDLTCAICFELFKEPVMLGCMHHFCRRCIVSYWKSVRS---PVTCPQCR--------------- 57

  Fly   254 VCGEHEETLSQYCLSCKAPACGLCIGELRHQAHDVQSINVTCKAQKTELSHNLQQLSEKARSTTE 318
                 :|..::.|.........| :.::|     ..|...:.|..:.||:..|:.......|...
Zfish    58 -----QEFPNKCCFQANYLVANL-VEKVR-----ASSSPASVKYLEKELNDCLESQCSMKDSYIS 111

  Fly   319 FIQRLKGMSDKVTESCMEFERLVHAQCEALIQAIHDRREYLLEAIRMDKDTKIRILKDQQSNCTG 383
            .|::.|...:|:.::..|.:..||..    .||:|       ..:|::::..|..||.:|.....
Zfish   112 MIRKDKDKMEKIKKTGAELQGRVHND----FQALH-------HFLRVEEEAMIEELKREQEEMLQ 165

  Fly   384 KLQQTTGLIQFCIEALKETDSAAFLQVGSMLINRVTNTDMTWHQEVTNAAPRV---SPIVDLTLD 445
            .|::....:|..|..:::.            ||.:..|..:..|.|....|::   ||:.:|.: 
Zfish   166 GLERHLEALQVAIRDVEKN------------INILRQTAGSTDQSVLVELPKLNSRSPLQELNI- 217

  Fly   446 DAALARAIDNLNFIQMRAVKDGDERCPAAPMTPTILPSDCSAENNSVTVAWQPPNHSFVEGYVLE 510
                     |||..:.:::         ||:.               .:.|:             
Zfish   218 ---------NLNSFRSKSI---------APLQ---------------YIVWR------------- 236

  Fly   511 LDDGSGGEFREVYCGKETICTVDGLHFNSMYNARVKAFNSAGEGEYSELIGLQTAEVAWFTFDPV 575
                                               |.|.....|....:....||.       |.
Zfish   237 -----------------------------------KMFQHLNPGPSPLIFDEDTAH-------PS 259

  Fly   576 LSGGAGSGLIFSKNNAT------------VSVEGWEHRVALGSVGFSRGVHYWEFTIDNYTADTD 628
            |........:...|..|            |::        |.:.||..|.||||..:.|     :
Zfish   260 LQLSRNKTQVIESNQMTSYLCDTKRFLQCVNI--------LATEGFQSGSHYWEVDVSN-----N 311

  Fly   629 PAF--GVARIDVAR--NKMLGKDEKSFAMYIDRQRSWFQHNSIHERRVEGG---------ITTGS 680
            |.:  |||...|.|  ...|..|...:.:   |.|...|:::        |         :|:..
Zfish   312 PKWDLGVALESVNRQVRVKLCPDNGYWTL---RLRDANQYSA--------GTQPWTRLTVMTSPC 365

  Fly   681 TIGVLLDLERHTLSF 695
            .||:.||.|...:||
Zfish   366 RIGIFLDCEESKVSF 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9-like_C-I 2..>35 CDD:438238
Bbox1_TRIM9-like_C-I 199..244 CDD:380861 9/50 (18%)
Bbox2_TRIM9-like 255..291 CDD:380822 4/35 (11%)
CC_brat-like 298..420 CDD:475168 23/121 (19%)
FN3 472..564 CDD:238020 6/91 (7%)
SPRY_PRY_TRIM67_9 561..735 CDD:293947 36/160 (23%)
trim105NP_001124134.1 RING_Ubox 9..63 CDD:473075 13/74 (18%)
RAD18 14..>165 CDD:227719 34/190 (18%)
SPRY_PRY_A33L 244..421 CDD:293962 37/168 (22%)
Blue background indicates that the domain is not in the aligned region.

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