DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrr47 and AT3G28040

DIOPT Version :9

Sequence 1:NP_001260355.1 Gene:Lrr47 / 34449 FlyBaseID:FBgn0010398 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_189443.2 Gene:AT3G28040 / 822428 AraportID:AT3G28040 Length:1016 Species:Arabidopsis thaliana


Alignment Length:445 Identity:100/445 - (22%)
Similarity:180/445 - (40%) Gaps:120/445 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 KTPRPVKSTLAIGYKQSARDANGNTK-KELEMVLFSGQNKTGNRYKVKDNIH-----VVHTKFVL 76
            ||.|.::.:|. |...:.:...|..| :.|:::..|..|.|||...:.:|.|     :.|..  |
plant    75 KTSRVIELSLD-GLALTGKINRGIQKLQRLKVLSLSNNNFTGNINALSNNNHLQKLDLSHNN--L 136

  Fly    77 DGK--TTIGFIQP---------------PDNLLIKCDPIQ--------LKGFLQTLKLGMDGKDA 116
            .|:  :::|.|..               .|:|...|..::        |:|.:.:........::
plant   137 SGQIPSSLGSITSLQHLDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNHLEGQIPSTLFRCSVLNS 201

  Fly   117 INLRLNINAATAIPQKAQPQVRMVISKRSEYP--IKGFPR--TLKSLTINNSQLV-KLSFEICTL 176
            :||..|                    :.|..|  :.|..|  .|::|.::::.|. .:...|.:|
plant   202 LNLSRN--------------------RFSGNPSFVSGIWRLERLRALDLSSNSLSGSIPLGILSL 246

  Fly   177 RNLTKLDVSGNKLT-KIPSELG------RLPLTSLHLGNNLLGTQNDWCWLRGTKLCQSLGELDL 234
            .||.:|.:..|:.: .:||::|      |:.|:|.|....|..|..        || :||...|:
plant   247 HNLKELQLQRNQFSGALPSDIGLCPHLNRVDLSSNHFSGELPRTLQ--------KL-KSLNHFDV 302

  Fly   235 SGNGLT-YFPPPLVKFESLVSLNLNNN-LLSRLPFAIRRMKALRKLYVCSNELE-SLPSAVEDLR 296
            |.|.|: .|||.:.....||.|:.::| |..:||.:|..:::|:.|.:..|:|. .:|.::|..:
plant   303 SNNLLSGDFPPWIGDMTGLVHLDFSSNELTGKLPSSISNLRSLKDLNLSENKLSGEVPESLESCK 367

  Fly   297 -IDLLDVWGNCFKEFNADAAQQMYLQKAASNSPQPLWLLGARAVDKYMLPLSAGSIP-------- 352
             :.::.:.||.|                :.|.|...:.||.:.:|.....|: ||||        
plant   368 ELMIVQLKGNDF----------------SGNIPDGFFDLGLQEMDFSGNGLT-GSIPRGSSRLFE 415

  Fly   353 -AVLIDLIREA-----PRCPCGE------LCYAQRKEDLFQRVVQPKFITVKNLT 395
             .:.:||...:     |    ||      :.|.....:.|...|.|:...::|||
plant   416 SLIRLDLSHNSLTGSIP----GEVGLFIHMRYLNLSWNHFNTRVPPEIEFLQNLT 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lrr47NP_001260355.1 LRR_8 154..211 CDD:290566 17/66 (26%)
LRR_4 156..194 CDD:289563 9/39 (23%)
leucine-rich repeat 156..178 CDD:275380 5/22 (23%)
leucine-rich repeat 179..199 CDD:275380 6/26 (23%)
leucine-rich repeat 201..228 CDD:275380 7/26 (27%)
leucine-rich repeat 229..274 CDD:275380 16/46 (35%)
leucine-rich repeat 275..298 CDD:275380 6/24 (25%)
AT3G28040NP_189443.2 LRRNT_2 33..73 CDD:285463
PLN00113 40..1002 CDD:215061 100/445 (22%)
leucine-rich repeat 79..102 CDD:275380 4/23 (17%)
LRR_RI 81..380 CDD:238064 75/346 (22%)
leucine-rich repeat 103..125 CDD:275380 7/21 (33%)
leucine-rich repeat 126..149 CDD:275380 5/24 (21%)
leucine-rich repeat 150..174 CDD:275380 3/23 (13%)
leucine-rich repeat 175..198 CDD:275380 2/22 (9%)
leucine-rich repeat 199..224 CDD:275380 7/44 (16%)
leucine-rich repeat 225..248 CDD:275380 5/22 (23%)
leucine-rich repeat 249..272 CDD:275380 6/22 (27%)
leucine-rich repeat 273..296 CDD:275380 8/31 (26%)
leucine-rich repeat 297..320 CDD:275380 8/22 (36%)
leucine-rich repeat 321..344 CDD:275380 8/22 (36%)
leucine-rich repeat 345..366 CDD:275380 6/20 (30%)
leucine-rich repeat 369..390 CDD:275380 5/36 (14%)
leucine-rich repeat 392..416 CDD:275380 6/24 (25%)
leucine-rich repeat 417..440 CDD:275380 5/26 (19%)
leucine-rich repeat 441..464 CDD:275380 4/22 (18%)
leucine-rich repeat 465..488 CDD:275380 2/2 (100%)
leucine-rich repeat 489..534 CDD:275380
leucine-rich repeat 537..560 CDD:275380
leucine-rich repeat 561..584 CDD:275380
STKc_IRAK 732..1002 CDD:270968
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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