DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrr47 and RLP38

DIOPT Version :9

Sequence 1:NP_001260355.1 Gene:Lrr47 / 34449 FlyBaseID:FBgn0010398 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_188953.1 Gene:RLP38 / 821887 AraportID:AT3G23120 Length:784 Species:Arabidopsis thaliana


Alignment Length:228 Identity:64/228 - (28%)
Similarity:91/228 - (39%) Gaps:71/228 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   153 PRTLKSLTINNSQLVKLSF---------EICTLRNLTKLDVSGNKLT-KIP-------------- 193
            |.:|..|.  |.:|:.||.         .|..|.|||.||:|.|||. ::|              
plant   295 PSSLSKLV--NLELLDLSHNNFRGLSPRSISKLVNLTSLDISYNKLEGQVPYFIWKPSNLQSVDL 357

  Fly   194 -----SELGR-------LPLTSLHLG-NNLLGTQNDWCWLRGTKLC--QSLGELDLSGNGLTYFP 243
                 .:||:       ..|..|:|| |:|.|....|       :|  :.:..||||.|..|...
plant   358 SHNSFFDLGKSVEVVNGAKLVGLNLGSNSLQGPIPQW-------ICNFRFVFFLDLSDNRFTGSI 415

  Fly   244 PPLVKFES-LVSLNLNNNLLSR-LPFAIRRMKALRKLYVC-SNELESLPSAVEDLR-IDLLDVWG 304
            |..:|..: ..:|||.||.||. ||........||.|.|. :|.:..||.::.:.: ::.|:|.|
plant   416 PQCLKNSTDFNTLNLRNNSLSGFLPELCMDSTMLRSLDVSYNNFVGKLPKSLMNCQDMEFLNVRG 480

  Fly   305 NCFKEFNADAAQQMYLQKAASNSPQPLWLLGAR 337
            |..|:                  ..|.| ||:|
plant   481 NKIKD------------------TFPFW-LGSR 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lrr47NP_001260355.1 LRR_8 154..211 CDD:290566 25/93 (27%)
LRR_4 156..194 CDD:289563 18/66 (27%)
leucine-rich repeat 156..178 CDD:275380 8/30 (27%)
leucine-rich repeat 179..199 CDD:275380 11/46 (24%)
leucine-rich repeat 201..228 CDD:275380 9/29 (31%)
leucine-rich repeat 229..274 CDD:275380 17/46 (37%)
leucine-rich repeat 275..298 CDD:275380 7/24 (29%)
RLP38NP_188953.1 PLN00113 11..>721 CDD:331614 64/228 (28%)
leucine-rich repeat 112..135 CDD:275380
leucine-rich repeat 136..159 CDD:275380
leucine-rich repeat 160..183 CDD:275380
leucine-rich repeat 184..206 CDD:275380
leucine-rich repeat 207..254 CDD:275380
leucine-rich repeat 255..276 CDD:275380
leucine-rich repeat 280..303 CDD:275380 3/9 (33%)
leucine-rich repeat 304..327 CDD:275380 5/22 (23%)
leucine-rich repeat 352..376 CDD:275380 2/23 (9%)
leucine-rich repeat 377..397 CDD:275380 8/26 (31%)
leucine-rich repeat 401..424 CDD:275380 8/22 (36%)
leucine-rich repeat 425..448 CDD:275380 9/22 (41%)
leucine-rich repeat 449..472 CDD:275380 7/22 (32%)
leucine-rich repeat 473..496 CDD:275380 10/41 (24%)
leucine-rich repeat 523..545 CDD:275380
leucine-rich repeat 659..682 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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