DRSC/TRiP Functional Genomics Resources

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Protein Alignment RluA-2 and Rpusd1

DIOPT Version :9

Sequence 1:NP_001188782.2 Gene:RluA-2 / 34440 FlyBaseID:FBgn0032256 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_001099244.1 Gene:Rpusd1 / 287148 RGDID:1304934 Length:306 Species:Rattus norvegicus


Alignment Length:202 Identity:55/202 - (27%)
Similarity:80/202 - (39%) Gaps:40/202 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   210 PVTSQPIKIVYMDKDIVVVNKPASIPVHPCGRYRHNTVVFILAKEHNLKNL---------RTIHR 265
            |.:.:.:.|||...|.:||||...:.:.  .:....|:.......|:...|         |..|:
  Rat     3 PGSMENLSIVYQSNDFLVVNKHWDLRID--SKTWRETLTLQKQLRHHFPELADPDTCYGFRFCHQ 65

  Fly   266 LDRLTSGLLLFGRTAEKARELELQIRTRQVQKEYVCRVEGRFPDGIVECNEKIDVVSYKIGVCKV 330
            ||..|||.|........|.......:.|:|.|.|:..|.|...:..|       .::|.||  :.
  Rat    66 LDFSTSGALCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQESQV-------TINYAIG--RN 121

  Fly   331 SPKGK----------DCKTTFKRIGEV--------GSDSI--VLCKPLTGRMHQIRVHLQFLGYP 375
            |.:|:          .|:.....:.|:        ..|.:  ||.||||||.||:|||...||:|
  Rat   122 STEGRTHTMCIEGTHGCENPKPSLTELLVLEHGLYSGDPVSKVLLKPLTGRTHQLRVHCSALGHP 186

  Fly   376 ISNDPLY 382
            |..|..|
  Rat   187 IVGDLTY 193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RluA-2NP_001188782.2 S4 157..229 CDD:238095 6/18 (33%)
PseudoU_synth_ScRIB2 202..386 CDD:211331 55/202 (27%)
Rpusd1NP_001099244.1 PseudoU_synth_RluA_like 18..215 CDD:211346 50/187 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D504187at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100211
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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