DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LManII and man2b2

DIOPT Version :9

Sequence 1:NP_609408.1 Gene:LManII / 34437 FlyBaseID:FBgn0027611 Length:1080 Species:Drosophila melanogaster
Sequence 2:XP_001337519.3 Gene:man2b2 / 100003570 ZFINID:ZDB-GENE-140106-166 Length:1006 Species:Danio rerio


Alignment Length:1156 Identity:297/1156 - (25%)
Similarity:473/1156 - (40%) Gaps:299/1156 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 LNVHLVAHTHDDVGWLKTVDQ--YYYGSETKIQKAGVQYIIDSVVEALLRDPEKRFIYVESAFFF 109
            :...::.|:|.||||:.||.:  :.|.|.          :..:|||.|.|...::||.||..||.
Zfish    23 IQAFVIPHSHMDVGWVYTVQESMHAYASN----------VYSTVVEELTRVKNRKFIAVEQEFFR 77

  Fly   110 KWW--------KEQKPKVQEAVKMLVEQGRLEFIGGAWSMNDEATTHYQSVIDQFSWGLRLLNDT 166
            .||        |:|       |:.|:.:||||||.|...|:|||.|.....|.|.:.|...|.:|
Zfish    78 LWWTNVASDWHKKQ-------VRQLLLEGRLEFIIGGQVMHDEAVTDVDDAILQLTEGHGFLYET 135

  Fly   167 FGECGRPRVGWQIDPFGHSREMASMFAQMGFDGMFFGRLDYQDKDERLMTKNAEMIWHGSANLGE 231
            ||.  |||..|.:||||.|.....:||..|||.....|:||..||:....|..:.:|.||..|.|
Zfish   136 FGV--RPRFAWHVDPFGASATTPVLFALAGFDAHLISRIDYDLKDDMQKNKKLQFVWRGSPTLKE 198

  Fly   232 EADLFSGAL---------YNNYQAPDGFCFD--ILCNDAPIIDGKHSPDNNV---KERID----T 278
            :.::|:..:         |..:....||.::  .|..|.| .|||: |:.::   ||.::    |
Zfish   199 KQEIFTHTMDQFSYCTPSYIPFSNRSGFYWNGVALFPDPP-KDGKY-PNMSLPVTKETVELYAQT 261

  Fly   279 FLDFAKTQSQYYRTNNIIVTMGGDFTYQAAQVYYKNLDKLIRYGNERQANGSNINLLYSTPSCYL 343
            .:|..:.::|::|:::::...|.|..:..|.|.:.|:|.|:.|.| ..::...:.:.|:|...|.
Zfish   262 MVDNIRLRAQWFRSSHVLWPWGCDKQFYNASVQFSNMDVLMNYIN-THSDQYGVTVQYATLKDYF 325

  Fly   344 KSLHDAGITWPTK-SDDFFPYASDPHAYWTGYFTSRPTLKRFERDGNHFLQVCKQLSAL------ 401
            ::||...::|..: :.||.||:::|...|||::.||..||...|..:..|...:.|...      
Zfish   326 QTLHQTNLSWDVRGNQDFLPYSTEPFQAWTGFYGSRNVLKGVARRASSLLYASESLFTRYHISYP 390

  Fly   402 -APKKPEEFDPHLTFMRETLGIMQHHDAITGTEKEKVALDY----------AKRMSVAFRACGAT 455
             .|.:.|.....|..:|..:..:||||.|||||..|||..|          |:.:..|......|
Zfish   391 DGPVQREWALSKLKALRWAVSEVQHHDGITGTESPKVADMYMEHLLQGMMGAEELLAAIFLLPQT 455

  Fly   456 TRNALNQLTVQSKDNVKDTSAKYVFEFKTCALLNITSCPVSEANDRFALTLYNPLAHTVNEYVRI 520
            ..|.:       .|.:|:|        .|.|..:..:.|...      :.:|||||..::.||.:
Zfish   456 LSNDI-------YDQIKNT--------PTTARTDSENVPEQH------IFVYNPLAWNISTYVNV 499

  Fly   521 PVPYSNYRIIDNKGVTLESQAVPIPQVLIDIKHRNSTAKYEIVFLATNIPALGYRTYYVE----- 580
            .|.|:...::|:.|..:.:|..|         ...|:..|:: |....:..|.||.|.|:     
Zfish   500 SVQYAMAVVLDDDGKAVPAQIQP---------SMESSTVYDL-FFVVELGGLQYRKYTVQFPQSP 554

  Fly   581 ----------------KLDSTE----GNTRSKALPKRTSSVTVIGNSHIQLGFDTNGFLSEVTAD 625
                            |.:.|.    ..|..|.||        :.|...:|.||....|.....|
Zfish   555 CDTGSACGATHVAKVVKFNKTNVRQWKKTGRKLLP--------VLNECYKLMFDQETNLLHSITD 611

  Fly   626 GLTRL---VSQEFLFYE-------GAVGNNAEFLNRSSGAYIFRPNENKIHFATDQVEIEVYKGD 680
            ...::   |.|:|..|:       |.:.:|          |||..|.:.:. |...|.:|:..|.
Zfish   612 RSKKIRVRVQQDFWEYKANGDVQSGPISDN----------YIFTANGSAVP-AYKSVVMEIVPGK 665

  Fly   681 LVHEVHQKF-------NDWISQVVRV----YNKDSYAEFE--WLVGPIPIDDGIGKEVITRFNSD 732
            ::.|:.|.|       |...|.|.||    ..:.|....|  :.|||:.::    :|.:.|..:.
Zfish   666 VISEIRQYFYREEEDANHTYSVVTRVPVGFKGRLSCFRLEQSYKVGPLEVN----RETVFRTRTS 726

  Fly   733 IASDGIFRTDSNGREMIKRKINHRDTWSVKINEAVAGNYYPITTKIDVEDDTARMAILTDRAQGG 797
            :.::....||:||.:|:||      |:....|..||.||||:.....:||:::|:..|::||.|.
Zfish   727 LQNNRTLFTDNNGYQMMKR------TYKGYANNTVARNYYPMVRVAYMEDESSRVVFLSERAHGV 785

  Fly   798 SSLKDGSLELMVHRRLLKDDAFGVGEALNETEYGDGLIARGKHHLFFGKSTD-------REGVSL 855
            :||..|.||:|:||||..:..:..|..|.   ..|..:.|....:..| |.|       :|.|.|
Zfish   786 ASLSQGQLEVMLHRRLWNNQEWNQGYNLT---LNDSSVVRPVLWMMLG-SPDSLSSIYQQEAVEL 846

  Fly   856 KG---IERLTQLEKLLPTWKFFSNMEDYSADEWQTAFTNIFSGIS---LVLPKPVHLLTL----- 909
            :.   :..:.|.:|||       |..:            .|||.|   :|||:.:|:.:|     
Zfish   847 QHRPVVMAIDQPQKLL-------NQRE------------TFSGPSVHPVVLPQNLHMQSLSIPGW 892

  Fly   910 --EPWHE-----------NQLLVRFEHIMENGEDASYSQPVQFNVKNVLSAF-DVEGIRETTLDG 960
              .|.|.           :::|:|..|:.|.||....|||...|:|.|:... .|..::|.:|.|
Zfish   893 NYSPEHSSGGDEKSEVNFDRILLRITHLYEEGESPVLSQPTTINLKEVMQGIGKVSKVQECSLTG 957

  Fly   961 NAWLDESRRLQFAPDPEEAAFNTYATFSQPAESVHLLSAEKPMLGVKYADEALPAGQLGAESNRI 1025
            ...:.:.:|..:..|                                                  
Zfish   958 TWNISDLQRWNWKTD-------------------------------------------------- 972

  Fly  1026 RRETETRQEKKDEGRSSKSTEGPYNSFKSDSSNQEYIIELSPMEIRTFIVY 1076
                ||.|:....|.|..:              |::.:.:||.|||||.:|
Zfish   973 ----ETMQKTDKSGFSGVT--------------QDFNVTISPKEIRTFFIY 1005

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LManIINP_609408.1 GH38N_AMII_LAM_like 47..323 CDD:212121 96/303 (32%)
Alpha-mann_mid 370..445 CDD:214875 28/91 (31%)
Glyco_hydro_38C 502..957 CDD:285047 134/534 (25%)
man2b2XP_001337519.3 PLN02701 20..1002 CDD:178304 294/1151 (26%)
GH38-57_N_LamB_YdjC_SF 23..348 CDD:330225 107/346 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1959
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D201312at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11607
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.920

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