DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LManI and AMS1

DIOPT Version :9

Sequence 1:NP_001260350.1 Gene:LManI / 34436 FlyBaseID:FBgn0032253 Length:950 Species:Drosophila melanogaster
Sequence 2:NP_011359.1 Gene:AMS1 / 852721 SGDID:S000003124 Length:1083 Species:Saccharomyces cerevisiae


Alignment Length:888 Identity:172/888 - (19%)
Similarity:293/888 - (32%) Gaps:272/888 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MINVHLVPHSHDDVGWL--------KTVDQYYYGSQNKIQHAGVQYILDTVVEELLKDSSRRFI- 56
            :.||:.:.:.|.|..||        |.|..  :.||..:.....:|               :|: 
Yeast   288 LTNVYGIGNCHIDTAWLWPFAETRRKIVRS--WSSQCTLMDRFPEY---------------KFVA 335

  Fly    57 -QVETFFFAKWYSE-QTETVQRAVKKLVAQGRLEFAGGAWSMNDEATVHYQSVVDQFNLGLRYLK 119
             |.:.|   ||..| ..|...:.:...:.|.:....||.|..||......:|:..||..|.|:..
Yeast   336 SQAQQF---KWLLEDHPEFFNKVLIPKIQQSQFFAVGGTWVENDTNIPSGESLARQFFFGQRFFL 397

  Fly   120 DTFGDCGRPTVGWQIDPFGHSREMASIFAQMAFNGEFFARMDYVDKKQRMLDLEMEMIWQSSESL 184
            ..||  .:..:.|..|.||:|.:|..:           .|:..:||     .|..::.|.:..|.
Yeast   398 KHFG--LKSKIFWLPDTFGYSSQMPQL-----------CRLSGIDK-----FLTQKLSWNNINSF 444

  Fly   185 KNS-----NIFTGMLYNHYSAPPGFCFDINCEDAPIIDGESYDNNVDARVSEFIDYVK----NMS 240
            .:|     .|....|..|  .|||                    |.....|.|.|.::    |.:
Yeast   445 PHSTFNWAGIDGSQLLTH--MPPG--------------------NTYTADSHFGDVLRTAKQNKT 487

  Fly   241 KSYRSTHIMV-PMGDDFQYEDAAVNFKNMDKL--IKYVNDRQ-------STGSQVNVFYSTPSCY 295
            ..|..:.:|: ..||.    ......:.:.|:  |:.:|:|.       ..|..|:.||.     
Yeast   488 PEYYGSGLMLYGKGDG----GGGPTEEMLQKMRRIRSMNNRNGNVIPKLQVGITVDEFYD----- 543

  Fly   296 LYELHQLKQTWPNKTEDFFPYSSDSH-SYWTGYFTSRPTQKRFHRDGN---HFFQTV-KQLSVLA 355
                ..||:|  |:..|...:|.:.: .:..|.:||:...|:..|...   |..:.: .:.|||.
Yeast   544 ----DILKRT--NQGHDLPTWSGELYFEFHRGTYTSQAQTKKLMRLSEIKLHDLEWIAAKTSVLY 602

  Fly   356 NLSGTQYSEDLDNLSQAMGIMQHHDAVTGT------EKQA------VASDYDRLLFKAIVGAENS 408
            ..|....|:.::.|.:.:.:.|.||.:.|:      :.:|      |..:...|:.|.:...::.
Yeast   603 PDSYKYPSKQINELWENVLLCQFHDVLPGSCIEMVYKYEAVPMLHNVVKECTSLIDKTVQFLQSQ 667

  Fly   409 ARDALRSLTNLT-------------SGEFESCL------------ELNISVCAFTQDTANNVIVT 448
            ::..|..:..||             :|.:.|.:            :|.:.:|..|     .||.:
Yeast   668 SKADLVEMRTLTWSKPEKVSEECSLNGSYTSSVTGYDDYIVLANGKLKVIICKKT-----GVITS 727

  Fly   449 LVNP---LAHSSTQYVRVPAKNENYIVTDEKGREVFSEVVPVPWQVLALE----------HRPND 500
            :.:.   :.:..|::.|.......:::.|:|         |:.||....|          .:|..
Yeast   728 ITDETLGVEYLDTEHGRNKLGANQFVIYDDK---------PLGWQAWDTELYSVNQYKYVTKPKK 783

  Fly   501 TQ----------HELVFEAS----VDKIANFLIRVLPSPKNIAED---------------QVQFP 536
            .|          .|::|:.|    :..:.:.....:...|....|               :|:||
Yeast   784 VQVSCNTKEKCAVEVIFQISEKCKIKSVISLNATAVTDAKLSKVDISTTVENWDARNKFLKVEFP 848

  Fly   537 VERSQDELTVET--SLVK--LTFDTTTGGLKTVKMNGFTENIQQTFGIYKGYRGNNGESKNRS-- 595
            |....|..:.||  .:.|  ..::|:....|       .|.....|..|..|      ||..|  
Yeast   849 VNIRNDFASYETQFGITKRPTHYNTSWDVAK-------FEVCHHKFADYSEY------SKGVSIL 900

  Fly   596 -SGAYVFRPYGDIEIVNNKVELSFYNGTKVKEVH-------------QHVNEWISQVIRIYEDVN 646
             ...|.|..:|      |.:.||.....|..:.|             .|.....|..:::..:.|
Yeast   901 NDCKYGFSTHG------NLMRLSLLRSPKAPDAHADMGTHEIKYAIYPHRGALSSDTVKLAHEFN 959

  Fly   647 RVEFEWLVGPIPTDDDVGKEIITRFSSNISSKGKFYTDSNGREILERERNQREHFTPDMSEAISG 711
            .. |::   .:|      |:|...|...||..|    |.|  .||...:...:      ..|:..
Yeast   960 YC-FKY---KLP------KDIGMNFDDIISISG----DEN--VILSNIKRGED------DSAVKS 1002

  Fly   712 NYYPVTGQISLQD-DEKRITLLNDRAQGGTSLKDGELELMLHR 753
            ||       ||.. ||:.|.:....:.||.|.......|.|.|
Yeast  1003 NY-------SLNPRDEQSIVVRVYESLGGESFASLNTTLNLKR 1038

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LManINP_001260350.1 GH38N_AMII_LAM_like 2..276 CDD:212121 61/296 (21%)
Alpha-mann_mid 323..398 CDD:286360 18/90 (20%)
Glyco_hydro_38C 536..941 CDD:285047 52/239 (22%)
AMS1NP_011359.1 AMS1 44..1083 CDD:223460 172/888 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344089
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.