DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loh and Adamts1

DIOPT Version :9

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:NP_077376.2 Gene:Adamts1 / 79252 RGDID:621241 Length:967 Species:Rattus norvegicus


Alignment Length:768 Identity:164/768 - (21%)
Similarity:254/768 - (33%) Gaps:237/768 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LLLIFS------------------ILTILATIHDSSFVQADLTTKERIKKHQDWLREHRKPKTKK 50
            ||.:||                  ::.||....:....:........::....|.::|..|..:.
  Rat   282 LLTLFSVAARFYKHPSIRNSISLVVVKILVIYEEQKGPEVTSNAALTLRNFCSWQKQHNSPSDRD 346

  Fly    51 KISINSYYELANLWHTRKDLSSPKQ-------------KPNNKEEYLENE------TT------- 89
            .    .:|:.|.|: ||:||.....             .|:.....:|::      ||       
  Rat   347 P----EHYDTAILF-TRQDLCGSHTCDTLGMADVGTVCDPSRSCSVIEDDGLQAAFTTAHELGHV 406

  Fly    90 -----------SKISNKSDEKVLKSSTIISLNATNP----STSTFKSVLET-------------T 126
                       :..:..|.:..|.:|.:.||:.:.|    |.....|.|:.             .
  Rat   407 FNMPHDDAKHCASFNGVSGDSHLMASMLSSLDHSQPWSPCSAYMVTSFLDNGHGECLMDKPQNPI 471

  Fly   127 TLPSVTTKDLFESGNVATTRQTPKVEEVFSSPNPPQEATSST----------------------- 168
            .|||.....|:::     .||........|:..|...:|.||                       
  Rat   472 KLPSDLPGTLYDA-----NRQCQFTFGEESTHCPDAASTCSTLWCTGTSGGLLVCQTKHFPWADG 531

  Fly   169 --------------SKKAKKKVYPYP---RWDKWSDWSSCSRSCGGGVKYQVRKCINRNLLTNNQ 216
                          ..|...|.:..|   .|..|..|..|||:|||||:|.:|:|       :|.
  Rat   532 TSCGEGKWCVSGKCVNKTDMKHFATPVHGSWGPWGPWGDCSRTCGGGVQYTMREC-------DNP 589

  Fly   217 LTSNA---CVGYFKRYQLCNDVPC-DEQSPDFRASQCSAYND--KEFHGHR--YRWEPY---VKD 270
            :..|.   |.|...||:.||...| |.....||..||.|:|:  |...|:.  ..|.|.   |..
  Rat   590 VPKNGGKYCEGKRVRYRSCNIEDCPDNNGKTFREEQCEAHNEFSKASFGNEPTVEWTPKYAGVSP 654

  Fly   271 DAECELNCMPFGMKSFATLNESVIDGTPCGHPAEYFRSQFWERAVCVDGACKAVQASGEIDGLYA 335
            ...|:|.|...|:..|..|...|:|||||...:         .:|||.|.|........||....
  Rat   655 KDRCKLTCEAKGIGYFFVLQPKVVDGTPCSPDS---------TSVCVQGQCVKAGCDRIIDSKKK 710

  Fly   336 HSGSVSCG--GLLCRPVTGIFTRNPLPEHAYIHVTTLPVGASNISITE-----LKNSINLLVLRT 393
            ......||  |..|:.::|..|..   ...|..:.|:|.||:||.:..     .:|:.:.|.:|.
  Rat   711 FDKCGVCGGNGSTCKKISGTVTST---RPGYHDIVTIPAGATNIEVKHRNPRGSRNNGSFLAIRA 772

  Fly   394 SNELAIFNGE---NTVSESGSYEAVGAVFDYHRIDGAEDSNGVTEWITSIGPIRDSLQLMV-FTK 454
            ::...|.||.   :|:.:..:|:  |.|..|      ..|:...|.|.|..|:::.|.:.| ...
  Rat   773 ADGTYILNGNFTLSTLEQDLTYK--GTVLRY------SGSSAALERIRSFSPLKEPLTIQVLMVG 829

  Fly   455 SANNTGVKYEYM----------LPIVSESEENEMSLESSDGLLRSGMEDTSSSSSSRAGRKRIFN 509
            .|....:||.|.          :|..||                                     
  Rat   830 HALRPKIKYTYFMKKKTEPFNAIPTFSE------------------------------------- 857

  Fly   510 WKVIGFSSCTKSCGGGTQTPIIRCIRKNPLRYYSQRRCTHSVKPVLNENLLHCNTQPCPAYWRFD 574
            |.:..:..|:|:||.|.|..::.|   ..:..:....|...|||.   :...|...|||. |:..
  Rat   858 WVIEEWGECSKTCGSGWQRRVVEC---RDINGHPASECAKEVKPA---STRPCADLPCPR-WQVG 915

  Fly   575 DWGECRCSSSGGLRRREVSCVQELASGLVIHVDKAACMEDQPPMQKQCECPKN 627
            ||..|..:...|.::|.:.|:.        |.......|...|::|    ||:
  Rat   916 DWSPCSKTCGKGYKKRTLKCLS--------HDGGVLSNESCDPLKK----PKH 956

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 23/59 (39%)
ADAM_spacer1 348..468 CDD:283607 31/138 (22%)
TSP1 667..716 CDD:214559
TSP1 779..835 CDD:214559
PLAC 847..877 CDD:285849
Adamts1NP_077376.2 Pep_M12B_propep 67..168 CDD:279848
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 198..252
Cysteine switch. /evidence=ECO:0000250 203..210
Reprolysin 258..467 CDD:279729 29/189 (15%)
ZnMc_ADAMTS_like 258..463 CDD:239801 29/185 (16%)
ADAM_CR 468..548 CDD:301627 11/84 (13%)
ADAM_CR 529..698 CDD:301627 55/184 (30%)
TSP1 562..614 CDD:214559 22/58 (38%)
Spacer 725..857 32/142 (23%)
ADAM_spacer1 725..842 CDD:283607 31/127 (24%)
TSP1 856..910 CDD:214559 16/96 (17%)
TSP1 912..>953 CDD:214559 10/48 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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