DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loh and Adamtsl2

DIOPT Version :10

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:NP_084257.1 Gene:Adamtsl2 / 77794 MGIID:1925044 Length:957 Species:Mus musculus


Alignment Length:1013 Identity:225/1013 - (22%)
Similarity:325/1013 - (32%) Gaps:356/1013 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 SGNVATTRQTPKVEEVFSSPNPPQEATSSTSKKAKKKVYPYPRWDKWSDWSSCSRSCGGGVKYQV 203
            :|..|.|.         :|.|.|  .::|....|....|   .|.:|:.|::|||||||||..|.
Mouse    21 AGGAAPTE---------ASDNSP--TSNSLEGGADTTAY---WWGEWTKWTACSRSCGGGVTSQE 71

  Fly   204 RKCINRNLLTNNQLTSNACVGYFKRYQLCNDVPCDEQSPDFRASQCSAYNDKEFHGHRYRWEPYV 268
            |.|:.:...:.....:..|||..||||||....|......||..||.::|.:.:.|..|:|:|..
Mouse    72 RHCLQQRRKSVPGTGNRTCVGTSKRYQLCRVQECPPDGRSFREEQCVSFNSRVYDGRAYQWKPLY 136

  Fly   269 KDD------AECELNCMPF-GMKSFATLNESVIDGTPCGHPAEYFRSQFWE-RAVCVDGACKAVQ 325
            .||      ..|:|:|... |.:.   |.....|||.|         :..: |.|||.|.|:.:.
Mouse   137 PDDYVHISSKPCDLHCSTVDGQRQ---LTVPARDGTSC---------KLTDLRGVCVSGKCEPIG 189

  Fly   326 ASGEIDGLYAHSGSVSCG-----GLLCRPVTGIFTR--NPLPEHAYIHVTTLPVGASNISITELK 383
            ..|.   |::......||     |..|..|||.:.:  |.|   .|..||.:|.||.:|.|.|.|
Mouse   190 CDGV---LFSTHTLDKCGVCQGDGSSCTHVTGNYRKGNNHL---GYSLVTHIPAGARDIQIVERK 248

  Fly   384 NSINLLVLRTSNELAIFNGENTVSESGSYEAVGAVFDYHR-IDGAEDSNGVTEWITSIGPIRDSL 447
            .|.::|.|........|||...|....::...|.|..|.| :|..|  .|: |:|.:.||....|
Mouse   249 KSADVLALADEAGFYFFNGNYKVDSPKNFNIAGTVVKYRRPMDVYE--TGI-EYIVAQGPTNQGL 310

  Fly   448 QLMVFTKSANNTGVKYEYML----------PI-------VSES---------------------- 473
            .:||:.::..:..:.:||.|          |:       .|:|                      
Mouse   311 NVMVWNQNGKSPSITFEYTLLQSPHMHHLPPVYYSFSEAASQSTESTERQELDSARLLGFMQHNG 375

  Fly   474 ---------------------------------EENEMSLESSDG-------------------- 485
                                             |.||:..::|.|                    
Mouse   376 SLYRQTSSERLGLNSQLFQPPAPEVELGPSRGQESNEVCKQASGGVCEGPPRGKGFQDHNATGRA 440

  Fly   486 ----------------------------LLRSGME------------------------------ 492
                                        ||.:|.|                              
Mouse   441 FSADKDDREISAHFTSHELLSANTISDQLLGTGSESEEFSLNETMNSIFAQGAPRSSPAESLYVD 505

  Fly   493 ---------------------------------DTSSSSSSRAG------------RKR------ 506
                                             :||:|..:.||            ||:      
Mouse   506 YEENEGPAAYLINGSYLELSSDRINTSSEAPFPNTSASPPNLAGNRTHKARTRPKARKQGVSPAD 570

  Fly   507 IFNWKVIGFSSCTKSCGGGTQTPIIRCIRKNPLRYYSQRRCTHSVKPVLNENLLH--CNTQPCPA 569
            ::.||:.....|:.:|..|..:....|:|.:.:. .....|....:|    ..:|  |..:.|..
Mouse   571 MYRWKLSSHEPCSATCTTGVMSTYAMCVRYDGVE-VDDSYCDALTRP----EPVHEFCAGRECQP 630

  Fly   570 YWRFDDWGECRCSSSGGLRRREVSCVQELASGLVIHVDKAACMEDQ---PPMQKQCECPKNRRRN 631
            .|....|.||..:...|.:.|.|.|.:.|:.|....|....|...:   |..:|.|..|      
Mouse   631 RWETSSWSECSRTCGEGHQFRIVRCWKMLSPGFDSSVYSDLCEATEAVRPEERKTCRNP------ 689

  Fly   632 LSRYRLSGPSESSSNSSQVKRSKIDGSDATAIWLVSDWNQYCSVTCGS-GVEYRTVFCDRSKAGE 695
                 ..||.                      |.:|:|:: |:..||. .|..|.:.|...   |
Mouse   690 -----ACGPQ----------------------WEMSEWSE-CTAKCGERSVVTRDIRCSED---E 723

  Fly   696 QRCDPSTTPESRRPCEKPACELGDWFTGPWSSCNGDCFDLTRTREVLCIRSQ-LITEHSECTPEL 759
            :.|||||.|...:.|..|.|: ..|....|..|:|.|......|.|.|..|. .:...|:|..|.
Mouse   724 KLCDPSTKPVGEKNCTGPPCD-RQWTVSDWGPCSGSCGQGRTIRHVYCKTSDGRVVPESQCQTET 787

  Fly   760 KPQSVEKCSHEEVEYCAARWHYSDWSECTKPCGGGTQRRSVRCLEYDIKMNALRESTHCRYTNRE 824
            ||.::..|..:.   |.|.|...||..|...||.|.::|.|.|:|.......:|....|....:.
Mouse   788 KPLAIHPCGDKN---CPAHWLAQDWERCNTTCGRGVKKRLVLCMELANGKPQIRSGPECGLARKP 849

  Fly   825 PIYRNCNVQAC--------AEVPKT------------------------EVTPV----------- 846
            |....|..:.|        :|..||                        .|.||           
Mouse   850 PEESTCFERPCFKWYTSPWSECTKTCGVGVRMRDVKCYQGTDIVRGCDPLVKPVGRQACDLQPCP 914

  Fly   847 -------CADK-FSNCQWASQAKLCSYDYYRDNCCFSC 876
                   |.|: .:||..|.:..||.:.||...||.||
Mouse   915 TEPPDDSCQDQPGTNCALAIKVNLCGHWYYSKACCRSC 952

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 24/55 (44%)
ADAMTS_spacer1 349..468 CDD:461796 39/131 (30%)
TSP1_ADAMTS 510..567 CDD:465950 11/58 (19%)
TSP1_ADAMTS 664..715 CDD:465950 18/51 (35%)
TSP1_ADAMTS 720..768 CDD:465950 14/48 (29%)
TSP1_ADAMTS 779..835 CDD:465950 15/55 (27%)
PLAC 847..877 CDD:462560 13/31 (42%)
Adamtsl2NP_084257.1 TSP1 50..106 CDD:214559 24/55 (44%)
ADAMTS_CR_3 <167..213 CDD:437068 15/57 (26%)
ADAMTS_spacer1 216..330 CDD:461796 38/119 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 532..568 7/35 (20%)
TSP1_ADAMTS 632..691 CDD:465950 16/69 (23%)
TSP1_ADAMTS 695..743 CDD:465950 18/51 (35%)
TSP1_ADAMTS 747..800 CDD:465950 15/55 (27%)
TSP1_ADAMTS 804..860 CDD:465950 15/55 (27%)
TSP1_ADAMTS 863..913 CDD:465950 6/49 (12%)
PLAC 922..953 CDD:462560 13/31 (42%)

Return to query results.
Submit another query.