DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loh and Adamtsl1

DIOPT Version :10

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:XP_006538438.1 Gene:Adamtsl1 / 77739 MGIID:1924989 Length:1999 Species:Mus musculus


Alignment Length:874 Identity:212/874 - (24%)
Similarity:312/874 - (35%) Gaps:276/874 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 EEVFSSPNPPQEATSSTSKKAKKKVYPYPRWDKWSDWSSCSRSCGGGVKYQVRKCINRNLLTNNQ 216
            ||..|......:....:|:.|:.:......||.|..||.|||:||||..|.:|:|          
Mouse   235 EEFLSDFLNSHKTEDPSSRTARSEEDREGLWDAWGPWSECSRTCGGGASYSLRRC---------- 289

  Fly   217 LTSNACVGYFKRYQLCNDVPCDEQSPDFRASQCSAYNDKEFHGHRYRWEPYVKD-DAECELNCMP 280
            |:|.:|.|...||:.|::|.|..::.||||.||||:||.::||..|.|.|...| |..|.|.|..
Mouse   290 LSSKSCEGRNIRYRTCSNVDCPPEAGDFRAQQCSAHNDVKYHGQLYEWLPVSNDPDNPCSLKCQA 354

  Fly   281 FGMKSFATLNESVIDGTPCGHPAEYFRSQFWERAVCVDGACKAVQASGEIDGLYAHSGSV----S 341
            .|......|...|:|||.|     |..|    ..:|:.|.|:.|....::       ||.    :
Mouse   355 KGTSLVVELAPKVLDGTRC-----YTES----LDMCISGLCQIVGCDHQL-------GSTVKEDN 403

  Fly   342 CG-----GLLCRPVTGIFTRNPLPEHAYIHVTTLPVGASNISITELKNSINLLVLRTSNELAIFN 401
            ||     |..||.|.|.:........:...|..:|.|:.:|.:. ||...:|.:  .:..|....
Mouse   404 CGVCNGDGSTCRLVRGQYKSQLSASKSDDTVVAIPYGSRHIRLV-LKGPDHLYL--ETKTLQGTK 465

  Fly   402 GENTVSESGSYEAVGAVFDYHRIDGAEDSNGVTEWITSIGPIRDSLQLMVFTKSANNTGVKYEYM 466
            |||::|.:|.:....:..|:.::..       .|.:...||:.....:.:......::.|::.:.
Mouse   466 GENSLSSTGIFLVDNSTVDFQKLPD-------KEILRMTGPLTADFIIKIHDLGPADSTVQFIFY 523

  Fly   467 LPIVSESEENEMSLESSDGLLRSGMEDTSSSSSSRAGRKRIFNWKVIGFSSCTKSCGGGTQTPII 531
            .||                                     |..|:...|..|:.:||||.|....
Mouse   524 QPI-------------------------------------IHRWRETDFFPCSATCGGGYQLTSA 551

  Fly   532 RC--IRKNPLRYYSQRRCTH---SVKPVLNENLLHCNTQPCPA-----------------YWRFD 574
            .|  :|.|  |..:.:.|.:   :|||  ...|..||..||||                 .|...
Mouse   552 ECYDLRSN--RVVADQYCHYYPENVKP--KPKLQECNLDPCPASDGYKQIMPYDLYHPLPRWEAT 612

  Fly   575 DWGECRCSSSGGLRRREVSCVQELASGLVIHVDKAACM-EDQPPMQKQC---ECPKNRRRNLSRY 635
            .|..|..|..||::.|.||||:|...|.|..|::..|| ..:.|:.:.|   :|||         
Mouse   613 PWTACSSSCGGGIQSRAVSCVEEDIQGHVTSVEEWKCMYTPKMPVVQPCNIFDCPK--------- 668

  Fly   636 RLSGPSESSSNSSQVKRSKIDGSDATAIWLVSDWNQYCSVTCGSGVEYRTVFC-DRSKAGEQRCD 699
                                        ||..:|:. |:||||.|:.||.|.| |........|.
Mouse   669 ----------------------------WLAQEWSP-CTVTCGQGLRYRVVLCIDHRGMHTGGCS 704

  Fly   700 PSTTPESRR------PCEKPACELG-----DWF-------------------TGPWSSCNGDCFD 734
            ..|.|..:.      ||.||..:|.     .||                   ...||:|...|..
Mouse   705 AKTKPHIKEECIIPTPCYKPREKLPIEAKLPWFKQAQELEEGAAVSEEPSFIPEAWSACTVTCGV 769

  Fly   735 LTRTREVLCIRSQLITEHSECTPEL--------KPQS-----VEKCSHEEVEYCAAR-------- 778
            .|:.|   .||.|::...|:...:|        ||.|     ...|:.|..|:....        
Mouse   770 GTQVR---IIRCQVLLPFSQSVADLPADECEGPKPASQRACYAGPCNGETPEFNPDNGDGLLGGL 831

  Fly   779 --------WHYSDWSECTKPCGGGTQRRSVRCLEYDIKMNALRESTHCRYTNREP-IYRNCNVQA 834
                    |.|..:::|::.||||.|...|.||....:  .|.:...|..:.|.| :.::||:..
Mouse   832 QDLDELYDWEYEGFTKCSESCGGGVQEAVVSCLNKQTR--ELADENLCVTSRRPPQLLKSCNLDP 894

  Fly   835 CA-----------------------------------EV----------PKTEVTPVCADKFSNC 854
            |.                                   ||          ||......| ::| ||
Mouse   895 CPARWEIGKWSPCSLTCGVGLQTRDVVCSHLLSREMNEVVVLADELCHHPKPSTVQAC-NRF-NC 957

  Fly   855 Q---WASQAKLCSYDYYRDNCCFSCTGGI 880
            .   :.:|.:|||.         :|.|||
Mouse   958 PPAWYPAQWQLCSR---------TCGGGI 977

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 23/55 (42%)
ADAMTS_spacer1 349..468 CDD:461796 20/118 (17%)
TSP1_ADAMTS 510..567 CDD:465950 19/61 (31%)
TSP1_ADAMTS 664..715 CDD:465950 21/57 (37%)
TSP1_ADAMTS 720..768 CDD:465950 16/79 (20%)
TSP1_ADAMTS 779..835 CDD:465950 17/56 (30%)
PLAC 847..877 CDD:462560 8/32 (25%)
Adamtsl1XP_006538438.1 TSP1 265..311 CDD:214559 23/55 (42%)
ADAMTS_CR_3 316..414 CDD:437068 38/113 (34%)
ADAMTS_spacer1 433..525 CDD:461796 18/101 (18%)
TSP1_ADAMTS 530..588 CDD:465950 19/61 (31%)
TSP1_ADAMTS 609..666 CDD:465950 19/56 (34%)
TSP1_ADAMTS 669..721 CDD:465950 17/52 (33%)
TSP1_ADAMTS 760..812 CDD:465950 14/54 (26%)
TSP1_ADAMTS 840..895 CDD:465950 17/56 (30%)
TSP1_ADAMTS 899..957 CDD:465950 6/59 (10%)
TSP1_ADAMTS 961..1017 CDD:465950 8/26 (31%)
TSP1_ADAMTS 1021..1078 CDD:465950
Ig 1124..1178 CDD:409353
Ig strand B 1124..1128 CDD:409353
Ig strand C 1137..1141 CDD:409353
Ig strand E 1159..1163 CDD:409353
Ig strand F 1173..1178 CDD:409353
Ig <1426..1486 CDD:472250
Ig strand B 1427..1431 CDD:409358
Ig strand C 1440..1444 CDD:409358
Ig strand E 1462..1466 CDD:409358
Ig strand F 1476..1481 CDD:409358
Ig_3 1514..1594 CDD:464046
Ig 1632..1723 CDD:472250
Ig strand B 1651..1655 CDD:409353
Ig strand C 1664..1668 CDD:409353
Ig strand E 1686..1693 CDD:409353
Ig strand F 1703..1708 CDD:409353
Ig strand G 1716..1719 CDD:409353
TSP1_ADAMTS 1786..1844 CDD:465950
TSP1_ADAMTS 1847..1903 CDD:465950
TSP1_ADAMTS 1907..1962 CDD:465950
PLAC 1967..1996 CDD:462560
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.