DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loh and adamts7

DIOPT Version :9

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:XP_021333676.1 Gene:adamts7 / 560364 -ID:- Length:1808 Species:Danio rerio


Alignment Length:553 Identity:166/553 - (30%)
Similarity:237/553 - (42%) Gaps:102/553 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 WDKWSDWSSCSRSCGGGVKYQVRKCINRNLLTNNQLTSNACVGYFKRYQLCNDVPCDEQSPDFRA 246
            |..|||||.|||:||.||:...|.|||    ...:.....|:|..:||:.||...|....|.||.
Zfish   569 WASWSDWSDCSRTCGTGVQNAQRDCIN----PVPKYGGRYCLGERQRYRTCNHESCPVDQPSFRH 629

  Fly   247 SQCSAYNDKEFHGHRYRWEPYVKDDAECELNCMPFGMKSFATLNESVIDGTPCGHPAEYFRSQFW 311
            .|||.:|...:.|..|:|.........|||:|.|........:.::|||||.|     |..||  
Zfish   630 MQCSRFNTVPYKGKFYKWIHVNNRVNPCELHCRPMNEHFSERMLDTVIDGTQC-----YEGSQ-- 687

  Fly   312 ERAVCVDGACKAVQASGEIDGLYAHSGSV--SCG-----GLLCRPVTGIFTRNPLPEHAYIHVTT 369
            .|.:||:|.||.:....|||     |.:|  .||     |..|..|...|..:  ....|:.:..
Zfish   688 SRDICVNGICKYLGCDFEID-----SDAVEDQCGVCLGNGSTCETVRKTFEDS--EGLGYVDIGL 745

  Fly   370 LPVGASNISITELKNSINLLVLRTSN-ELAIFNGENTVSESGSYEAVGAVFDYHRIDGAEDSNGV 433
            :|.||.:|.|.|:..:.|.|.||::: |....||..|:..:|.|:|.|.:|.|.|       .|.
Zfish   746 IPEGARDIRIEEVAEAGNYLALRSNDPEKYFLNGGWTIQWNGEYKAAGTIFTYER-------TGQ 803

  Fly   434 TEWITSIGPIRDSLQLMVFTKSANNTGVKYEYMLPIVSESEENEMSLESSDGLLRSGMEDTSSSS 498
            .|.::|.||..:.:.:.:..:. .|.||:|||.:       ..:..|:||:|...|         
Zfish   804 LENLSSPGPTMEPVWIQLLFQE-TNPGVRYEYTI-------SRDTLLDSSNGTAVS--------- 851

  Fly   499 SSRAGRKRIFNWKVIGFSSCTKSCGGGTQTPIIRCIRKNPLRYYSQRRCTHSVKPVLNENLLHCN 563
                    .|.|....::.|:.:||.|.|..|:.|:.|.. ....:..|..|::|  ::....||
Zfish   852 --------YFQWIYGAWTECSATCGTGMQRQIVHCVEKTS-GIVEEHYCDASMRP--DDKQTSCN 905

  Fly   564 TQPCPAYWRFDDWGECRCSSSG--GLRRREVSCVQELASGLVIHVDKAACMEDQPPMQKQCECPK 626
            ...|||.|...||.:| .||.|  |||:|.|.|::.|.            :::|..:| ..||  
Zfish   906 KGLCPAIWWAGDWQKC-SSSCGEMGLRKRTVLCIRSLG------------LDEQRALQ-PAEC-- 954

  Fly   627 NRRRNLSRYRLSGPSESSSNSSQVKRSKIDGSDATAIWLVSDWNQYCSVTCGSGVEYRTVFCDRS 691
                    ..|..|......::||        ...|.|....|:: |||:|.:|:..|.|.| |.
Zfish   955 --------QHLPKPESIIPCNTQV--------SCPADWTTGSWSE-CSVSCATGLRIRDVTC-RW 1001

  Fly   692 KAGEQRCDPSTTPESRRPCEKPAC----ELGDW 720
            ..|.. |||...|.|..||....|    ::.||
Zfish  1002 NTGSD-CDPKAKPNSTMPCYAQDCPINTDISDW 1033

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 23/55 (42%)
ADAM_spacer1 348..468 CDD:283607 35/120 (29%)
TSP1 667..716 CDD:214559 19/52 (37%)
TSP1 779..835 CDD:214559
PLAC 847..877 CDD:285849
adamts7XP_021333676.1 Pep_M12B_propep 68..211 CDD:307618
ZnMc_ADAMTS_like 270..477 CDD:239801
ADAM_CR <513..556 CDD:326582
ADAM_CR 540..697 CDD:326582 52/138 (38%)
TSP1 569..621 CDD:214559 23/55 (42%)
ADAM_spacer1 726..836 CDD:310520 35/119 (29%)
TSP1 855..910 CDD:214559 14/57 (25%)
TSP1 976..1025 CDD:214559 19/51 (37%)
Herpes_U47 <1363..>1441 CDD:283192
TSP1 1588..1646 CDD:214559
TSP_1 1651..1695 CDD:326556
TSP1 1698..1755 CDD:214559
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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