DRSC/TRiP Functional Genomics Resources

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Protein Alignment loh and Ppn

DIOPT Version :10

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:NP_788752.2 Gene:Ppn / 43872 FlyBaseID:FBgn0003137 Length:2898 Species:Drosophila melanogaster


Alignment Length:729 Identity:210/729 - (28%)
Similarity:313/729 - (42%) Gaps:128/729 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   183 DKWSDWSS---CSRSCGGGVKYQVRKCINRNLLTNNQLTSNACVGYFKRYQLCNDVPCDEQSPDF 244
            |:|:.|||   |||:|||||.||.|:|:.|     :......|.|..:||..||...|.|:..||
  Fly    58 DEWTPWSSPSDCSRTCGGGVSYQTRECLRR-----DDRGEAVCSGGSRRYFSCNTQDCPEEESDF 117

  Fly   245 RASQCSAYNDKEFHGHRYRWEPYVKDDAECELNCMPFGMKSFATLNESVIDGTPCGHPAEYFRSQ 309
            ||.|||.::.::|.|..|.|.||......|||||||.|.:.:....|.|:|||.|...       
  Fly   118 RAQQCSRFDRQQFDGVFYEWVPYTNAPNPCELNCMPKGERFYYRQREKVVDGTRCNDK------- 175

  Fly   310 FWERAVCVDGACKAVQASGEIDGLYAHSGSVSCG--GLLCRPVTGIFTRNPLPEHAYIHVTTLPV 372
              :..|||:|.|..|.....:...........||  |..|:.:....|...|.. .|..:..||.
  Fly   176 --DLDVCVNGECMPVGCDMMLGSDAKEDKCRKCGGDGSTCKTIRNTITTKDLAP-GYNDLLLLPE 237

  Fly   373 GASNISITELKNSINLLVLRTSNELAIFNGENTVSESGSYEAVGAVFDYHRID---GAEDSNGVT 434
            ||:||.|.|...|.|.|..|..:.....||:..:..........:.::|.|..   .|.|.    
  Fly   238 GATNIRIEETVPSSNYLACRNHSGHYYLNGDWRIDFPRPMFFANSWWNYQRKPMGFAAPDQ---- 298

  Fly   435 EWITSIGPIRDSLQLMVFTKSANNTGVKYEYMLPIVSESEENEMSLESSDGLLRSGMEDTSSSSS 499
              :|..|||.:||.:::..:. .|..:.|||.:|            ||    |....:||.:   
  Fly   299 --LTCSGPISESLFIVMLVQE-KNISLDYEYSIP------------ES----LSHSQQDTHT--- 341

  Fly   500 SRAGRKRIFNWKVIGFSSCTKSCGGGTQTPIIRCIRKNPLRYYSQRRCTHSVKPVLNENLLHCNT 564
                      |....|::|:.|||||:|:..:.|..:..|...:...|....|||..:   .|.|
  Fly   342 ----------WTHHQFNACSASCGGGSQSRKVTCNNRITLAEVNPSLCDQKSKPVEEQ---ACGT 393

  Fly   565 QPCPAYWRFDDWGECR--CSSSGGLRRREVSCVQELASGLVIHVDKAACMED---QPPMQKQC-- 622
            :||..:|...:|.:|.  |.|. |.:.|.::|.:..:||.....:.|.|:::   :|..:::|  
  Fly   394 EPCAPHWVEGEWSKCSKGCGSD-GFQNRSITCERISSSGEHTVEEDAVCLKEVGNKPATKQECNR 457

  Fly   623 ---ECPK----------------NRRRNLSRY-------RLSGPSESSSNSSQVKRSKI----DG 657
               .|||                .:.|.::.:       |:....:......:.::|.:    :|
  Fly   458 DVKNCPKYHLGPWTPCDKLCGDGKQTRKVTCFIEENGHKRVLPEEDCVEEKPETEKSCLLTPCEG 522

  Fly   658 SDATAIWLVSDWNQYCSVTCGSGVEYRTVFCDRSKAG----EQRCDPSTTPESRRPCEKPACELG 718
            .|    |::|.|:. |: .||...|.||..|. :|.|    |:.|:|. .|...|||:.|.|| .
  Fly   523 VD----WIISQWSG-CN-ACGQNTETRTAICG-NKEGKVYPEEFCEPE-VPTLSRPCKSPKCE-A 578

  Fly   719 DWFTGPWSSCNGDCFDLTRTREVLC--IRSQLIT---EHSECTPELKPQSVEKCSHEEVEYCAAR 778
            .||:..||.|:..|....::|.|:|  ...:.:|   :.|:|..|.||:|.:.|..|| :.|...
  Fly   579 QWFSSEWSKCSAPCGKGVKSRIVICGEFDGKTVTPADDDSKCNKETKPESEQDCEGEE-KVCPGE 642

  Fly   779 WHYSDWSECTKPCGGGTQRRSVRCLEYDIKMNALRESTHCRYTNREPIYRNCNVQACAE---VPK 840
            |....|.:|:||||||.:.|.|.||....|      |.:|.....||:...||.:||.|   :|.
  Fly   643 WFTGPWGKCSKPCGGGERVREVLCLSNGTK------SVNCDEEKVEPLSEKCNSEACTEDEILPL 701

  Fly   841 TEVTPVCADKFSNC 854
            |.......|...:|
  Fly   702 TSTDKPIEDDEEDC 715

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 24/57 (42%)
ADAMTS_spacer1 349..468 CDD:461796 31/121 (26%)
TSP1_ADAMTS 510..567 CDD:465950 17/56 (30%)
TSP1_ADAMTS 664..715 CDD:465950 20/54 (37%)
TSP1_ADAMTS 720..768 CDD:465950 16/52 (31%)
TSP1_ADAMTS 779..835 CDD:465950 20/55 (36%)
PLAC 847..877 CDD:462560 2/8 (25%)
PpnNP_788752.2 TSP1 60..111 CDD:214559 23/55 (42%)
ADAMTS_CR_3 116..213 CDD:437068 36/105 (34%)
ADAMTS_spacer1 222..329 CDD:461796 30/114 (26%)
TSP1_ADAMTS 347..396 CDD:465950 16/51 (31%)
TSP1_ADAMTS 400..457 CDD:465950 14/57 (25%)
TSP1_ADAMTS 465..520 CDD:465950 3/54 (6%)
TSP1_ADAMTS 580..632 CDD:465950 16/51 (31%)
TSP1_ADAMTS 643..693 CDD:465950 20/55 (36%)
MSCRAMM_ClfA <1049..1262 CDD:468110
Kunitz_papilin_lacunin-like 1612..1663 CDD:438681
Kunitz_BPTI 1670..1721 CDD:425421
Kunitz-type 1730..1780 CDD:438633
Kunitz_BPTI 1789..1840 CDD:425421
Kunitz_papilin_mig6-like 1849..1899 CDD:438679
Kunitz_papilin_mig6-like 1922..1972 CDD:438679
Kunitz_papilin_mig6-like 2001..2051 CDD:438679
Kunitz-type 2071..2121 CDD:438633
Kunitz_BPTI 2127..2178 CDD:425421
Kunitz_BPTI 2193..2245 CDD:425421
Kunitz_BPTI 2252..2303 CDD:425421
Kunitz_BPTI 2317..2372 CDD:425421
WAP 2455..2497 CDD:459672
Ig 2530..2610 CDD:472250
Ig strand B 2539..2543 CDD:409353
Ig strand C 2552..2556 CDD:409353
Ig strand E 2576..2579 CDD:409353
Ig strand F 2589..2594 CDD:409353
Ig strand G 2603..2606 CDD:409353
IG_like 2627..2703 CDD:214653
Ig strand B 2636..2640 CDD:409353
Ig strand C 2649..2653 CDD:409353
Ig strand E 2670..2674 CDD:409353
Ig strand F 2684..2689 CDD:409353
Ig strand G 2697..2700 CDD:409353
I-set 2766..2845 CDD:400151
Ig strand B 2771..2775 CDD:409353
Ig strand C 2784..2788 CDD:409353
Ig strand F 2821..2826 CDD:409353
PLAC 2851..2883 CDD:462560
Blue background indicates that the domain is not in the aligned region.

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