DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loh and Adamts7

DIOPT Version :9

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:NP_001040566.1 Gene:Adamts7 / 315879 RGDID:1306713 Length:1808 Species:Rattus norvegicus


Alignment Length:1103 Identity:228/1103 - (20%)
Similarity:333/1103 - (30%) Gaps:456/1103 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 WDKWSDWSSCSRSCGGGVKYQVRKC---INRNLLTNNQLTSNACVGYFKRYQLCNDVPCDEQSPD 243
            |..||.||.||||||.||:...|:|   :.:|       ....|||..|||:|||...|....|.
  Rat   736 WSGWSAWSVCSRSCGVGVRSSERQCTQPVPKN-------KGKYCVGERKRYRLCNLQACPPDRPS 793

  Fly   244 FRASQCSAYNDKEFHGHRYRWEPYVKDDAECELNCMPFGMKSFATLNESVIDGTPCGHPAEYFRS 308
            ||.:|||.::...:.|..::|.|.:.|:..|||:|.||...:...|.::|:|||||      ::.
  Rat   794 FRHTQCSQFDSMLYKGKLHKWVPVLNDENPCELHCRPFNYSNREKLRDAVMDGTPC------YQG 852

  Fly   309 QFWERAVCVDGACKAVQASGEIDGLYAHSGSVS--CG-----GLLCRPVTGIFTRNPLPEHAYIH 366
            :. .|.:|:||.||.|....|:|     ||:..  ||     |..|..|:..|  .......|:.
  Rat   853 RI-SRDICIDGICKKVGCDFELD-----SGAEEDRCGVCRGDGSTCHTVSRTF--KEAEGMGYVD 909

  Fly   367 VTTLPVGASNISITELKNSINLLVLRTSNELAIF-NGENTVSESGSYEAVGAVFDYHRIDGAEDS 430
            |..:|.||..|.|.|:..:.|.|.||:.:....| ||..|:..:|.|:..|..|.|.|       
  Rat   910 VGLIPAGAREILIEEVAEAANFLALRSEDPDKYFLNGGWTIQWNGDYQVAGTTFTYTR------- 967

  Fly   431 NGVTEWITSIGPIRDSLQLMVFTKSANNTGVKYEYMLPIVSESEEN--EMS-------------- 479
            .|..|.:||.||..:.:.:.:..:. .|.||.|:|.:...|.||..  |.|              
  Rat   968 KGNWETLTSPGPTTEPVWIQLLFQE-RNPGVHYKYTIQRASHSEAQPPEFSWHYGPWSKCPVTCG 1031

  Fly   480 ----------LESSDGLLRSGMEDTSSSSSSRAGRKRIFN-------WKVIGFSSCTKSCG-GGT 526
                      :|...|::..|..|..|....   |||..|       |.|..:..|::||| ||.
  Rat  1032 TGVQRQSLYCMEKQAGIVDEGHCDHLSRPRD---RKRKCNEEPCPARWWVGDWQPCSRSCGPGGF 1093

  Fly   527 QTPIIRCIRKNPL---RYYSQRRCTHSVKPVLNENLLHCNTQPCPAYWRFDDWGECRCSSSGGLR 588
            ....:.|.|...|   |......|.|..:|:......|  ...||:.|...:|.:|..:...|:|
  Rat  1094 FRRAVFCTRSVGLDEQRALEPSACGHLPRPLAEIPCYH--YVACPSSWGVGNWSQCSVTCGAGIR 1156

  Fly   589 RREVSCVQEL-------------------------------ASG--------------------- 601
            :|.|.|:...                               |||                     
  Rat  1157 QRSVLCINNTGVPCDGAERPITETFCFLQPCQYSTYIVDTGASGSGSSSPELFNEVDFDPHQPVP 1221

  Fly   602 --------LVIHVDKAACMED-------------------------------------------- 614
                    ..:.:..|...||                                            
  Rat  1222 RPSPASSPKPVSISNAIDEEDPELDPPGPVFVDDFYYDYNFINFHEDLSYGSFEESHSDLVDIGG 1286

  Fly   615 ----------QPP---------------------------------------------------- 617
                      :||                                                    
  Rat  1287 QTVPPHIRPTEPPSDSPVPTAGAPGAEEEGIQGSWSPSPLLSEASHSPPVLLENTPVNPLANFLT 1351

  Fly   618 -------------------------------------------MQKQCECPKNRRRNLSR----- 634
                                                       .|.|...|.:.|..||:     
  Rat  1352 EEESPIGAPELGLPSVSWPPASVDGMVTSVAPGNPDELLVREDTQSQPSTPWSDRNKLSKDGNPL 1416

  Fly   635 -------------YRLSGPSESSSNSS-------------------------------------Q 649
                         .:.|.||.|::.:|                                     |
  Rat  1417 GPTSPALPKSPFPTQPSSPSNSTTQASLSPDAVEVSTGWNVALDPVLEADLKPVHAPTDPGLLDQ 1481

  Fly   650 VKRSKIDGSDA-----------------------------------------TAIWLVSDWNQYC 673
            ::....:|:.:                                         .|.|.|.:|:| |
  Rat  1482 IQTPHTEGTQSPGLLPRPAQETQTNSSKDPAVQPLQPSLVEDGAPTDLLPAKNASWQVGNWSQ-C 1545

  Fly   674 SVTCGSGVEYRTVFCDRSKAGEQRCDPSTTPESRRPCEKPACELGDWFTGPWSSCNGDCFDLTRT 738
            |.|||.|..:|.|.|  |...::.|..|:.|:..|.|....|  ..|..|.||.|:.:|...:.|
  Rat  1546 STTCGLGAIWRLVRC--SSGNDEDCTLSSRPQPARHCHLRPC--AAWRAGNWSKCSRNCGGGSAT 1606

  Fly   739 REVLCI--------------------------------------------------RSQLIT--E 751
            |:|.|:                                                  :.:|:|  |
  Rat  1607 RDVQCVDTRDLRPLRPFHCQPGPTKPPTRQLCGTQPCLPWYTSSWRECSEACGGGEQQRLVTCPE 1671

  Fly   752 HSECTPELKPQSVEKCSHEEVEYCAARWHYSDWSECTKPCGGGTQRRSVRCLEYDIKMNALREST 816
            ...|...|:|.:...|:    .:...:|....|.:|:.|||||.|||.|:|:.....: |..:|.
  Rat  1672 PGLCEESLRPNNTRPCN----THPCTQWVVGPWGQCSAPCGGGVQRRLVKCVNTQTGL-AEEDSD 1731

  Fly   817 HCRYTNREPIYRNCNVQACAEVPKTEVTPVC-ADK--FSNCQWASQAKLCSYDYYRDNCCFSC 876
            .|.:.......|.|..:.|..|..:.    | .|:  |:.|:.......|.....|..||.||
  Rat  1732 LCSHEAWPESSRPCATEDCELVEPSR----CERDRLPFNFCETLRLLGRCQLPTIRAQCCRSC 1790

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 25/58 (43%)
ADAM_spacer1 348..468 CDD:283607 35/120 (29%)
TSP1 667..716 CDD:214559 17/48 (35%)
TSP1 779..835 CDD:214559 18/55 (33%)
PLAC 847..877 CDD:285849 10/33 (30%)
Adamts7NP_001040566.1 Pep_M12B_propep 271..386 CDD:279848
Reprolysin 436..647 CDD:279729
ZnMc_ADAMTS_like 436..644 CDD:239801
ADAM_CR <690..724 CDD:301627
TSP1 736..788 CDD:214559 25/58 (43%)
ADAM_spacer1 894..1004 CDD:283607 35/119 (29%)
TSP1 1018..1073 CDD:214559 9/57 (16%)
TSP1 1137..1187 CDD:214559 8/49 (16%)
TSP1 1591..1643 CDD:214559 9/51 (18%)
TSP1 1648..1692 CDD:214559 7/47 (15%)
TSP1 1692..1751 CDD:214559 18/59 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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