DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loh and AdamTS-B

DIOPT Version :9

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:NP_572247.2 Gene:AdamTS-B / 31490 FlyBaseID:FBgn0029791 Length:1023 Species:Drosophila melanogaster


Alignment Length:455 Identity:140/455 - (30%)
Similarity:205/455 - (45%) Gaps:80/455 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 WDKWSDWSSCSRSCGGGVKYQVRKCINRNLLTNNQLTSNA---CVGYFKRYQLCNDVPCDEQSPD 243
            |..||:||.|||||||||..|.|:|       :|.:.:|.   |:|..|||::|...||..:.|.
  Fly   614 WGDWSEWSECSRSCGGGVSTQQREC-------DNPVPANGGVFCIGERKRYKICRKRPCPAEEPS 671

  Fly   244 FRASQCSAYNDKEFHGHRYRWEPYVKDDAECELNCMPFGMKSFATLNESVIDGTPCGHPAEYFRS 308
            |||.||:.:::..:.|..|:|.|:...:..|:|.|........|....:|:|||||         
  Fly   672 FRAQQCARFDNVSYQGATYKWLPFFDKNNPCKLFCSDVDDTIIANWGATVLDGTPC--------- 727

  Fly   309 QFWERAVCVDGACKAVQASGEIDGLYAHSGSVSCGGL--LCRPVTGIFTRNPL--PEHAYIHVTT 369
            ......:|:||.||.|.....:|..........|||.  .|:||...:| :|.  .:.||:.:.|
  Fly   728 TLGTNNMCIDGICKKVGCDWIVDSEVQDDRCGVCGGSGDQCQPVRETYT-DPFAAKDGAYVEIVT 791

  Fly   370 LPVGASNISITELKNSINLLVLRTSN--ELAIFNGENTVSESGSYEAVGAVFDYHRIDGAEDSNG 432
            :|..|.:|.|.||.||.:.|.:.|.:  :....||::.:|..|.:|..||...|.|:|..|.   
  Fly   792 IPARARHILIRELANSPHFLAIATGDGGDRFYLNGDSLISMPGEFEIAGAESLYDRVDEQET--- 853

  Fly   433 VTEWITSIGPIRDSLQLMVFTK-SANNTGVKYEYMLPIVSESEENEMSLESSDGLLRSGMEDTSS 496
                ||...||:.|:.|....: :.:|.|:.||:.||.::.:                       
  Fly   854 ----ITIPQPIQHSISLYAIVRGNESNAGIFYEFTLPALNVT----------------------- 891

  Fly   497 SSSSRAGRKRIFNWKVIGFSSCTKSCGGGTQ--TPIIRCIRKNPLRYYSQRRC-THSVKPVLNEN 558
                 |||:  |.|::..:::|:.|||||.|  .||  | ::|.........| ||:........
  Fly   892 -----AGRQ--FQWRLSNWTACSASCGGGVQHREPI--C-QENGKALGDTLPCWTHAKNKRPARQ 946

  Fly   559 LLHCNTQPCPAYWRFDDWGEC--RCSSSGGL----RRREVSCVQE----LASGLVIHVDKAACME 613
            ...|..|||||:|....|..|  .|...|.:    |||.|.|:.|    :|.....|:.|.|.||
  Fly   947 SRGCGDQPCPAHWWPGPWQFCPVTCRPVGFVAPPQRRRSVVCLDEHDVVVADAECGHLQKPAEME 1011

  Fly   614  613
              Fly  1012  1011

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 26/58 (45%)
ADAM_spacer1 348..468 CDD:283607 38/124 (31%)
TSP1 667..716 CDD:214559
TSP1 779..835 CDD:214559
PLAC 847..877 CDD:285849
AdamTS-BNP_572247.2 Pep_M12B_propep 78..194 CDD:279848
ZnMc_ADAMTS_like 314..518 CDD:239801
Reprolysin 315..521 CDD:279729
ADAM_CR <558..602 CDD:301627
TSP1 614..666 CDD:214559 26/58 (45%)
ADAM_spacer1 773..886 CDD:283607 36/120 (30%)
TSP1 901..956 CDD:214559 17/57 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438273
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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