DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loh and Adamtsl4

DIOPT Version :9

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:XP_038958286.1 Gene:Adamtsl4 / 310670 RGDID:1561012 Length:1035 Species:Rattus norvegicus


Alignment Length:917 Identity:254/917 - (27%)
Similarity:378/917 - (41%) Gaps:166/917 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 HTRKDLSSPKQKPNNK---EEYLENE--TTSKISNKSDEKVLKSSTIISLNATNPSTSTFKSVLE 124
            |..:.|:....:|.:.   ||.|.::  :|...|.|....:....  :...:.:||..|.:|...
  Rat   168 HRSRRLAHKPGQPKDSSTAEETLPSQPPSTEPASEKHSPHMQPPE--LRAQSRSPSAETPRSGTA 230

  Fly   125 TTTLPSVTTKDLFESGNVATTRQTPKVEEVFSSPNPPQEATSSTSKKAKKKVYPYPRWDK----- 184
            .|.:||.|:....:.|..|.|...........||.|    ...||:.|:::.:|:....:     
  Rat   231 QTEVPSRTSSAPSDMGIPAPTSSFRDSRSFQGSPEP----RMPTSQGAERQPHPFSPVTRSQLSR 291

  Fly   185 --WSDWSSCSRSCGGGVKYQVRKCINRNLLTNNQLTSNACVGYFKRYQLCNDVPCDEQSPDFRAS 247
              |....|..||..|.:........:.:|...:..|.. |.|..::.:.|:..||..:.||.||.
  Rat   292 RHWRPPGSPHRSPDGWLPLTRDSSPHWSLFAPSSPTPE-CSGESEQMRACSQEPCPPEQPDPRAL 355

  Fly   248 QCSAYNDKEFHGHRYRWEPY--VKDDAECELNCMPFGMKSFATLNESVIDGTPCGHPAEYFRSQF 310
            ||:|::.:||.|..|:|||:  |:....|||||.|.|.:.:....|.|.|||.|         |.
  Rat   356 QCAAFDSQEFMGQLYQWEPFTEVQGSQRCELNCRPRGFRFYVRHTEKVQDGTLC---------QP 411

  Fly   311 WERAVCVDGACKAVQASGEIDGLYAHSGSVSCG--GLLCRPVTGIFT--RNPLPEHAYIHVTTLP 371
            ....:||.|.|.:....|.:.......|...||  |..||.|:|..|  ..||   .|..:..:|
  Rat   412 GSLDICVAGHCLSPGCDGILGSGRRPDGCGVCGGDGSTCRLVSGNLTDRGGPL---GYQKILWIP 473

  Fly   372 VGASNISITELKNSINLLVLRTSNELAIFNGENTVSESGSYEAVGAVFDYHRIDGAEDSNGVTEW 436
            .|||::.|::.:.|.|.|.||.....:|.||...|...|||.|||.||.|:|....|   |..|.
  Rat   474 AGASHLRISQFRPSSNYLALRGPGGRSIINGNWAVDPPGSYAAVGTVFQYNRPPREE---GKGET 535

  Fly   437 ITSIGPIRDSLQL-MVFTKSANNTGVKYEYMLPIVSESEEN-------EMSLESSDGLLRSGME- 492
            :::.||....:.: |:|.:  :|.||.|:|:.....||...       :..:...:.||.|... 
  Rat   536 LSAEGPTTQPVDVYMIFQE--DNPGVFYQYVTSAAPESPSTMPPALQLQPEMLRGEPLLPSAPRP 598

  Fly   493 --------------------DTSSSSSSRAGRKRIFNWKVIGFSSCTKSCGGGTQTPIIRCIRKN 537
                                ...::..|.||     .||.:|.|.|:.|||.|...||..|:.:.
  Rat   599 VRAPGTLQRQARIPQVPPPTHVRTAMGSSAG-----YWKQVGHSECSASCGKGVWRPIFLCVSRE 658

  Fly   538 PLRYYSQRRCTHSVKPVLNENLLHCNTQPCPAYWRFDDWGECRCSSSGGLRRREVSCVQELASGL 602
            ......::.|....:|..:..  .|:..|||.||...:|..|..|...|.:.|::.|.||...| 
  Rat   659 SGEELDEQSCAVGARPPASPE--SCHRPPCPPYWEAGEWTSCSRSCGPGTQHRQLLCRQEFGGG- 720

  Fly   603 VIHVDKAACMEDQPPMQKQC-ECPKNRRRNLSRYRLSGPSESSS-------------NSSQVK-- 651
                     ....||  ::| ..|:.......:.||.|..|.||             .|.||:  
  Rat   721 ---------GSSVPP--ERCGHLPRPNITQSCQLRLCGHWEISSPWSQCSVRCGRGQRSRQVRCV 774

  Fly   652 ---------------------RSKIDGSDATAIWLVSDWNQYCSVTCGSGVEYRTVFCDRS---- 691
                                 |...|....|..|..|||:..||..||:|::.|.|.|.||    
  Rat   775 GSNGHEVGKQECASGPPPPPSREACDMGPCTTAWFYSDWSSKCSAECGTGIQRRAVVCLRSGETL 839

  Fly   692 ----KAG--EQRCDPSTTPESRRPCEKPACELGD------WFTGPWSSCNGDCFDLTRTREVLCI 744
                :||  ||.|     |...||.:..||.||.      |:|||||.|:.:|...|:.|:::|:
  Rat   840 QGDPEAGSTEQGC-----PLRSRPPDMRACSLGPCEKTWRWYTGPWSECSSECGSGTQHRDIICV 899

  Fly   745 RSQL-----ITEHSECTPELKPQSVEKCSHEEVEYCAARWHYSDWSECTKPCGGGTQRRSVRCLE 804
             |:|     :|..|.|:...:|.:::.|   :.:.|..:|..:.||.|::.|.||.|.|.|:||.
  Rat   900 -SKLGTKFNVTSPSNCSHLPRPPALQPC---QGQACEDQWFSTLWSPCSQSCQGGVQTREVQCLS 960

  Fly   805 YDIKMNALRESTHCRYTNREPIYRNCNVQACAEVPKTEVTPVCADKFSNCQWASQAKLCSYDYYR 869
            .:..::: |...|.|.:.:.|    ||.|.|.:.|..:    |.|...:|....||:||.|.||.
  Rat   961 SNHTLSS-RCPPHLRPSRKRP----CNSQPCNQRPDDQ----CKDSSPHCPLVVQARLCVYPYYT 1016

  Fly   870 DNCCFSC 876
            ..||.||
  Rat  1017 ATCCRSC 1023

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 11/62 (18%)
ADAM_spacer1 348..468 CDD:283607 43/122 (35%)
TSP1 667..716 CDD:214559 22/58 (38%)
TSP1 779..835 CDD:214559 19/55 (35%)
PLAC 847..877 CDD:285849 14/30 (47%)
Adamtsl4XP_038958286.1 PHA03247 <24..358 CDD:223021 44/196 (22%)
ADAM_spacer1 451..564 CDD:368694 42/120 (35%)
TSP1_ADAMTS 637..686 CDD:408800 12/50 (24%)
TSP1_ADAMTS 690..746 CDD:408800 15/67 (22%)
TSP1_ADAMTS 754..804 CDD:408800 5/49 (10%)
TSP1_ADAMTS 808..869 CDD:408800 26/65 (40%)
TSP1_ADAMTS 875..931 CDD:408800 18/59 (31%)
TSP1_ADAMTS 935..986 CDD:408800 19/55 (35%)
PLAC 994..1023 CDD:400844 12/28 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D201044at33208
OrthoFinder 1 1.000 - - FOG0005105
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_106612
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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