DRSC/TRiP Functional Genomics Resources

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Protein Alignment loh and Adamts16

DIOPT Version :10

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:NP_001358944.1 Gene:Adamts16 / 306664 RGDID:1310046 Length:1221 Species:Rattus norvegicus


Alignment Length:753 Identity:205/753 - (27%)
Similarity:297/753 - (39%) Gaps:167/753 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 PYP---RWDKWSDWSSCSRSCGGGVKYQVRKCINRNLLTNNQLTSNACVGYFKRYQLCNDVPCDE 239
            |.|   .|..||.||.|||:|||||.::.|.|.|.......:.    |.|..:..:|||...|..
  Rat   579 PKPTHGHWSDWSPWSPCSRTCGGGVSHRDRLCTNPRPSHGGKF----CQGSARTLKLCNSQKCPL 639

  Fly   240 QSPDFRASQCSAYNDKEFHGHRYRWEPY--VKDDAECELNCMPFGMKSFATLNESVIDGTPCGHP 302
            .|..|||:||:.||.|.|.|..|:|.||  |:|...|:|.|:..|...|.:|:..|.|||||...
  Rat   640 DSVGFRAAQCAEYNSKRFRGWLYKWTPYTQVEDQDLCKLYCIAEGFDFFFSLSNKVKDGTPCSED 704

  Fly   303 AEYFRSQFWERAVCVDGACKAVQASGEIDGLYAHSGSVSCGGLLCRPVT-------GIFTRNPLP 360
            :         |.||:||.|:.|   |..:.|.:.:...|||  :|:...       |::::|. |
  Rat   705 S---------RNVCIDGMCEKV---GCDNVLGSDATEDSCG--VCQGNNSDCVMHRGLYSKNH-P 754

  Fly   361 EHAYIHVTTLPVGASNISITELKNSINLLVLRTSNELAIFNGENTVSESGSYEAVGAVFDYHRID 425
            .:.|.||.|:|.||.:|.|.|...|.:.:.:|.|.:....||..:|...|.|:..|..|:|.|  
  Rat   755 TNQYYHVVTIPSGARSIHIYETNISTSYISVRNSVKKYYLNGHWSVDWPGRYKFSGTTFNYRR-- 817

  Fly   426 GAEDSNGVTEWITSIGPIRDSLQLMVFTKSANNTGVKYEYMLPIVSESEENEMSLESSDGLLRSG 490
                |....|.:||.||..::| ::.......|.||.:|:.:|                   |||
  Rat   818 ----SYKEPESLTSTGPTNETL-IVELLFQGRNPGVAWEFSVP-------------------RSG 858

  Fly   491 MEDTSSSSSSRAGRKRIFNWKVIGFSSCTKSCGGGTQTPIIRCIRKNPLRYYSQRRCTHSVKPVL 555
            .:.|.....|       ::|.::. |.|:.|||||..:....|.|...: ..:...|....:|| 
  Rat   859 SKRTPPPQPS-------YSWAILR-SECSVSCGGGKMSSKAGCYRDLKV-LVNASFCNPKTRPV- 913

  Fly   556 NENLLHCNTQPCPAYWRFDDWGECRCSSSGGLRRREVSCVQELASGLVIH-----VDKAACMEDQ 615
             ..|:.|....||..|...:|..|..:..||.:.|.|.|.:.      .|     :..:.|.:..
  Rat   914 -PALVPCKVSACPPSWSVGNWSTCSRTCGGGTQSRPVHCTRR------AHYREESISASLCPQPA 971

  Fly   616 PPMQKQC---ECPKNRRRNLSRYRLSGPSESSSNSSQVKRSKIDGSDATAIWLVSDWNQYCSVTC 677
            ||:.:.|   .||              |:                      |....|.: ||.||
  Rat   972 PPLHQACNSQSCP--------------PA----------------------WSTGPWAE-CSRTC 999

  Fly   678 GSGVEYRTVFCDRSKAG-------EQRCDPSTTPESRRPCEKPACELG---DWFTGPWSSCNGDC 732
            |.|...|||.|..:...       :..|.....|.:.:.|....|...   .|....||.|:..|
  Rat  1000 GKGWRKRTVACKSTNPSARAQLLHDTACTSEPKPRTHQVCLLKRCHKHKKLQWLVSAWSPCSATC 1064

  Fly   733 FDLTRTREVLCIRSQLITEHSECTPELKPQSVEKCSH-----EEVE-------------YCAA-- 777
            ...|:.|.:.|....:..::.|.       :.:||.|     .|:|             |.|:  
  Rat  1065 QRGTQHRVLRCAEKYVSGKYREL-------ASKKCLHLPKPDLELERACGLIPCPKHPPYAASGP 1122

  Fly   778 ---RWHYSDWSECTKPCGGGTQRRSVRCLEYDIKMNALRESTHCRYTNREPIYRNCNVQACAEVP 839
               .|..|.||.||..||||.|||:|:||      ...:.::.|....:......||...|....
  Rat  1123 PRGSWFASPWSLCTASCGGGVQRRTVQCL------LGGQPASDCFLHEKPETSTACNTHFCPIAE 1181

  Fly   840 KTEVTPVCADKFSNCQWASQAKLCSYDYYRDNCCFSCT 877
            |.:.  .|.|.|..|....|..:||:.:|...||.:|:
  Rat  1182 KRDT--FCRDLFHWCYLVPQHGMCSHRFYSKQCCNTCS 1217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 21/55 (38%)
ADAMTS_spacer1 349..468 CDD:461796 36/125 (29%)
TSP1_ADAMTS 510..567 CDD:465950 15/56 (27%)
TSP1_ADAMTS 664..715 CDD:465950 15/57 (26%)
TSP1_ADAMTS 720..768 CDD:465950 10/47 (21%)
TSP1_ADAMTS 779..835 CDD:465950 19/55 (35%)
PLAC 847..877 CDD:462560 10/29 (34%)
Adamts16NP_001358944.1 ADAMTS_spacer1 745..855 CDD:461796 36/117 (31%)
TSP1_ADAMTS 928..983 CDD:465950 13/60 (22%)
TSP1_ADAMTS 987..1044 CDD:465950 15/57 (26%)
TSP1_ADAMTS 1052..1111 CDD:465950 14/65 (22%)
TSP1_ADAMTS 1127..1177 CDD:465950 19/55 (35%)
PLAC 1187..1217 CDD:462560 10/29 (34%)
Pep_M12B_propep 74..202 CDD:460254
ZnMc_ADAMTS_like 287..488 CDD:239801
ADAMTS_CR_2 505..572 CDD:465496
TSP1 586..638 CDD:214559 21/55 (38%)
ADAMTS_CR_3 644..742 CDD:437068 41/111 (37%)
Blue background indicates that the domain is not in the aligned region.

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